Hi,
I am trying to install Aspect on my Ubuntu 18 machine locally. I am stuck at the first step where we have to install Deal .II via Candi to compile dependencies. I am getting the following error after 82%. Earlier there were a few issues regarding versions (as I am using Ubuntu18) but I finally solved that. I need the help from the experts. Thanks in advance.
– Configuring done
– Generating done
– Build files have been written to: /home/arghya/candi/work/tmp/build/deal.II-v9.4.2
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target doxygen_headers
[ 2%] Built target obj_boost_serialization_debug
[ 4%] Built target obj_boost_serialization_release
[ 4%] Built target obj_boost_system_debug
[ 4%] Built target obj_boost_system_release
[ 4%] Built target obj_boost_iostreams_debug
[ 4%] Built target obj_boost_iostreams_release
[ 6%] Built target obj_tbb_debug
[ 8%] Built target obj_tbb_release
[ 11%] Built target obj_umfpack_L_UMF_debug
[ 15%] Built target obj_umfpack_L_UMF_release
[ 18%] Built target obj_umfpack_Z_UMF_debug
[ 22%] Built target obj_umfpack_Z_UMF_release
[ 22%] Built target obj_umfpack_L_UMFPACK_debug
[ 23%] Built target obj_umfpack_L_UMFPACK_release
[ 23%] Built target obj_umfpack_DL_TSOLVE_debug
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[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_release
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_X_release
[ 25%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_release
[ 25%] Built target obj_umfpack_DL_TRIPLET_NOMAP_NOX_debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_NOMAP_NOX_release
[ 25%] Built target obj_umfpack_DL_STORE_debug
[ 25%] Built target obj_umfpack_DL_STORE_release
[ 25%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 25%] Built target obj_umfpack_DL_ASSEMBLE_release
[ 25%] Built target obj_umfpack_DL_SOLVE_debug
[ 25%] Built target obj_umfpack_DL_SOLVE_release
[ 25%] Built target obj_umfpack_ZL_TSOLVE_debug
[ 25%] Built target obj_umfpack_ZL_TSOLVE_release
[ 25%] Built target obj_umfpack_ZL_TRIPLET_MAP_NOX_debug
[ 25%] Built target obj_umfpack_ZL_TRIPLET_MAP_NOX_release
[ 25%] Built target obj_umfpack_ZL_TRIPLET_MAP_X_debug
[ 25%] Built target obj_umfpack_ZL_TRIPLET_MAP_X_release
[ 25%] Built target obj_umfpack_ZL_TRIPLET_NOMAP_X_debug
[ 25%] Built target obj_umfpack_ZL_TRIPLET_NOMAP_X_release
[ 25%] Built target obj_umfpack_ZL_TRIPLET_NOMAP_NOX_debug
[ 25%] Built target obj_umfpack_ZL_TRIPLET_NOMAP_NOX_release
[ 26%] Built target obj_umfpack_ZL_STORE_debug
[ 26%] Built target obj_umfpack_ZL_STORE_release
[ 26%] Built target obj_umfpack_ZL_ASSEMBLE_debug
[ 26%] Built target obj_umfpack_ZL_ASSEMBLE_release
[ 26%] Built target obj_umfpack_ZL_SOLVE_debug
[ 26%] Built target obj_umfpack_ZL_SOLVE_release
[ 26%] Built target obj_umfpack_GENERIC_debug
[ 26%] Built target obj_umfpack_GENERIC_release
[ 27%] Built target obj_amd_int_debug
[ 27%] Built target obj_amd_int_release
[ 28%] Built target obj_amd_long_debug
[ 28%] Built target obj_amd_long_release
[ 28%] Built target obj_amd_global_debug
[ 28%] Built target obj_amd_global_release
[ 28%] Built target obj_muparser_debug
[ 29%] Built target obj_muparser_release
[ 29%] Built target obj_arborx_inst
[ 29%] Built target obj_arborx_debug
[ 31%] Built target obj_numerics_inst
[ 33%] Built target obj_numerics_debug
[ 36%] Built target obj_fe_inst
[ 40%] Built target obj_fe_debug
[ 41%] Built target obj_dofs_inst
[ 42%] Built target obj_dofs_debug
[ 43%] Built target obj_lac_inst
[ 46%] Built target obj_lac_debug
[ 47%] Built target obj_base_inst
[ 53%] Built target obj_base_debug
[ 53%] Built target obj_cgal_inst
[ 53%] Built target obj_cgal_debug
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[ 54%] Built target obj_grid_inst
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[ 56%] Built target obj_multigrid_inst
[ 57%] Built target obj_multigrid_debug
[ 58%] Built target obj_distributed_inst
[ 58%] Built target obj_distributed_debug
[ 58%] Built target obj_algorithms_inst
[ 59%] Built target obj_algorithms_debug
[ 60%] Built target obj_matrix_free_inst
[ 61%] Built target obj_matrix_free_debug
[ 61%] Built target obj_meshworker_inst
[ 61%] Built target obj_meshworker_debug
[ 61%] Built target obj_opencascade_inst
[ 61%] Built target obj_opencascade_debug
[ 61%] Built target obj_particle_inst
[ 63%] Built target obj_particle_debug
[ 64%] Built target obj_differentiation_ad_inst
[ 64%] Built target obj_differentiation_ad_debug
[ 65%] Built target obj_differentiation_sd_inst
[ 65%] Built target obj_differentiation_sd_debug
[ 65%] Built target obj_physics_inst
[ 65%] Built target obj_physics_debug
[ 66%] Built target obj_physics_elasticity_inst
[ 66%] Built target obj_physics_elasticity_debug
[ 66%] Built target obj_non_matching_inst
[ 66%] Built target obj_non_matching_debug
[ 66%] Built target obj_sundials_inst
[ 66%] Built target obj_sundials_debug
[ 66%] Built target deal_II.g
[ 66%] Built target obj_arborx_release
[ 68%] Built target obj_numerics_release
[ 71%] Built target obj_fe_release
[ 71%] Built target obj_dofs_release
[ 75%] Built target obj_lac_release
[ 79%] Built target obj_base_release
[ 79%] Built target obj_cgal_release
[ 79%] Built target obj_gmsh_release
[ 80%] Built target obj_grid_release
[ 80%] Built target obj_hp_release
[ 81%] Built target obj_multigrid_release
[ 81%] Built target obj_distributed_release
[ 81%] Built target obj_algorithms_release
[ 82%] Built target obj_matrix_free_release
[ 82%] Built target obj_meshworker_release
[ 82%] Built target obj_opencascade_release
[ 82%] Built target obj_particle_release
[ 82%] Built target obj_differentiation_ad_release
[ 82%] Built target obj_differentiation_sd_release
[ 82%] Built target obj_physics_release
[ 82%] Built target obj_physics_elasticity_release
[ 82%] Built target obj_non_matching_release
[ 82%] Built target obj_sundials_release
[ 82%] Built target deal_II
[ 82%] Built target obj_integrators_debug
[ 82%] Built target obj_integrators_release
[ 82%] Built target obj_rol_inst
[ 82%] Built target obj_rol_debug
[ 82%] Built target obj_rol_release
[ 82%] Linking CXX executable …/bin/step-1.debug
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSCreate’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetTolerances’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSDestroy’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetOperators’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetST’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetTarget’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetWhichEigenpairs’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetProblemType’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetDimensions’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetFromOptions’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetConvergenceTest’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSolve’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSGetConverged’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSGetIterationNumber’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSComputeError’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSGetEigenpair’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSSetType’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSArnoldiSetDelayed’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSLanczosSetReorthog’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘EPSGDSetDoubleExpansion’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STCreate’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STDestroy’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STSetMatMode’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STSetKSP’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STSetType’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STSetShift’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘STCayleySetAntishift’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘SlepcInitialize’
…/lib/libdeal_II.g.so.9.4.2: error: undefined reference to ‘SlepcFinalize’
collect2: error: ld returned 1 exit status
examples/CMakeFiles/step-1.debug.dir/build.make:218: recipe for target ‘bin/step-1.debug’ failed
make[2]: *** [bin/step-1.debug] Error 1
CMakeFiles/Makefile2:5576: recipe for target ‘examples/CMakeFiles/step-1.debug.dir/all’ failed
make[1]: *** [examples/CMakeFiles/step-1.debug.dir/all] Error 2
Makefile:135: recipe for target ‘all’ failed
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building dealii v9.4.2.