This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by PyLith Installer configure 2.2.2-0, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/configure --enable-python --with-make-threads=2 --disable-hdf5 --disable-netcdf --prefix=/Users/gcheng6/pylith CPPFLAGS=-I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include LDFLAGS=-L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib CC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc CXX=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx

## --------- ##
## Platform. ##
## --------- ##

hostname = argon-login-1.hpc
uname -m = x86_64
uname -r = 3.10.0-1127.19.1.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Aug 25 17:23:54 UTC 2020

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf-4.2.15/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/bin
PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libiconv-1.16/bin
PATH: /Users/gcheng6/pylith/bin
PATH: /opt/sge/bin
PATH: /opt/sge/bin/lx-amd64
PATH: /Users/gcheng6/Software/miniconda3/bin
PATH: /Users/gcheng6/Software/miniconda3/condabin
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /opt/puppetlabs/bin
PATH: /Users/gcheng6/tools/MintPy/mintpy
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /Users/gcheng6/.local/bin
PATH: /Users/gcheng6/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2839: checking for a BSD-compatible install
configure:2907: result: /usr/bin/install -c
configure:2918: checking whether build environment is sane
configure:2973: result: yes
configure:3124: checking for a thread-safe mkdir -p
configure:3163: result: /usr/bin/mkdir -p
configure:3170: checking for gawk
configure:3186: found /usr/bin/gawk
configure:3197: result: gawk
configure:3208: checking whether make sets $(MAKE)
configure:3230: result: yes
configure:3259: checking whether make supports nested variables
configure:3276: result: yes
configure:3355: checking how to create a pax tar archive
configure:3366: tar --version
tar (GNU tar) 1.26
Copyright (C) 2011 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by John Gilmore and Jay Fenlason.
configure:3369: $? = 0
configure:3409: tardir=conftest.dir && eval tar --format=posix -chf - "$tardir" >conftest.tar
configure:3412: $? = 0
configure:3416: tar -xf - <conftest.tar
configure:3419: $? = 0
configure:3421: cat conftest.dir/file
GrepMe
configure:3424: $? = 0
configure:3437: result: gnutar
configure:4235: checking build system type
configure:4249: result: x86_64-pc-linux-gnu
configure:4269: checking host system type
configure:4282: result: x86_64-pc-linux-gnu
configure:4323: checking how to print strings
configure:4350: result: printf
configure:4383: checking for style of include used by make
configure:4411: result: GNU
configure:4482: checking for gcc
configure:4509: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:4738: checking for C compiler version
configure:4747: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc --version >&5
gcc (Spack GCC) 5.4.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4758: $? = 0
configure:4747: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -v >&5
Reading specs from /opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/specs
COLLECT_GCC=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/bin/gcc
COLLECT_LTO_WRAPPER=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /dev/shm/gpjohnsn/spack-stage-gcc-5.4.0-btz6b3gjw4d3lopwpyt6lh6eyaj2omhr/spack-src/configure --prefix=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g --with-pkgversion='Spack GCC' --with-bugurl=https://github.com/spack/spack/issues --disable-multilib --enable-languages=c,c++,fortran --disable-nls --with-mpfr-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/include --with-mpfr-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib --with-gmp-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/include --with-gmp-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib --with-mpc-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/include --with-mpc-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib --with-isl-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/include --with-isl-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib --with-stage1-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib' --with-boot-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib -static-libstdc++ -static-libgcc'
Thread model: posix
gcc version 5.4.0 (Spack GCC) 
configure:4758: $? = 0
configure:4747: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4758: $? = 1
configure:4747: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4758: $? = 1
configure:4778: checking whether the C compiler works
configure:4800: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c  >&5
configure:4804: $? = 0
configure:4852: result: yes
configure:4855: checking for C compiler default output file name
configure:4857: result: a.out
configure:4863: checking for suffix of executables
configure:4870: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c  >&5
configure:4874: $? = 0
configure:4896: result: 
configure:4918: checking whether we are cross compiling
configure:4926: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c  >&5
configure:4930: $? = 0
configure:4937: ./conftest
configure:4941: $? = 0
configure:4956: result: no
configure:4961: checking for suffix of object files
configure:4983: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:4987: $? = 0
configure:5008: result: o
configure:5012: checking whether we are using the GNU C compiler
configure:5031: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:5031: $? = 0
configure:5040: result: yes
configure:5049: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -g
configure:5069: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:5069: $? = 0
configure:5110: result: yes
configure:5127: checking for /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc option to accept ISO C89
configure:5190: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc  -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:5190: $? = 0
configure:5203: result: none needed
configure:5228: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc understands -c and -o together
configure:5250: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c conftest.c -o conftest2.o
configure:5253: $? = 0
configure:5250: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c conftest.c -o conftest2.o
configure:5253: $? = 0
configure:5265: result: yes
configure:5284: checking dependency style of /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:5395: result: none
configure:5410: checking for a sed that does not truncate output
configure:5474: result: /usr/bin/sed
configure:5492: checking for grep that handles long lines and -e
configure:5550: result: /usr/bin/grep
configure:5555: checking for egrep
configure:5617: result: /usr/bin/grep -E
configure:5622: checking for fgrep
configure:5684: result: /usr/bin/grep -F
configure:5719: checking for ld used by /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:5786: result: /usr/bin/ld
configure:5793: checking if the linker (/usr/bin/ld) is GNU ld
configure:5808: result: yes
configure:5820: checking for BSD- or MS-compatible name lister (nm)
configure:5874: result: /usr/bin/nm -B
configure:6004: checking the name lister (/usr/bin/nm -B) interface
configure:6011: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:6014: /usr/bin/nm -B "conftest.o"
configure:6017: output
0000000000000000 B some_variable
configure:6024: result: BSD nm
configure:6027: checking whether ln -s works
configure:6031: result: yes
configure:6039: checking the maximum length of command line arguments
configure:6170: result: 3458764513820540925
configure:6218: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:6258: result: func_convert_file_noop
configure:6265: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:6285: result: func_convert_file_noop
configure:6292: checking for /usr/bin/ld option to reload object files
configure:6299: result: -r
configure:6373: checking for objdump
configure:6389: found /usr/bin/objdump
configure:6400: result: objdump
configure:6432: checking how to recognize dependent libraries
configure:6632: result: pass_all
configure:6717: checking for dlltool
configure:6747: result: no
configure:6777: checking how to associate runtime and link libraries
configure:6804: result: printf %s\n
configure:6865: checking for ar
configure:6881: found /usr/bin/ar
configure:6892: result: ar
configure:6929: checking for archiver @FILE support
configure:6946: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:6946: $? = 0
configure:6949: ar cru libconftest.a @conftest.lst >&5
configure:6952: $? = 0
configure:6957: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6960: $? = 1
configure:6972: result: @
configure:7030: checking for strip
configure:7046: found /usr/bin/strip
configure:7057: result: strip
configure:7129: checking for ranlib
configure:7145: found /usr/bin/ranlib
configure:7156: result: ranlib
configure:7258: checking command to parse /usr/bin/nm -B output from /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc object
configure:7411: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:7414: $? = 0
configure:7418: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:7421: $? = 0
configure:7487: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c conftstm.o >&5
configure:7490: $? = 0
configure:7528: result: ok
configure:7575: checking for sysroot
configure:7605: result: no
configure:7612: checking for a working dd
configure:7650: result: /usr/bin/dd
configure:7654: checking how to truncate binary pipes
configure:7669: result: /usr/bin/dd bs=4096 count=1
configure:7805: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:7808: $? = 0
configure:7998: checking for mt
configure:8028: result: no
configure:8048: checking if : is a manifest tool
configure:8054: : '-?'
configure:8062: result: no
configure:8739: checking how to run the C preprocessor
configure:8770: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c
configure:8770: $? = 0
configure:8784: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:8784: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8809: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E
configure:8829: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c
configure:8829: $? = 0
configure:8843: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:8843: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8872: checking for ANSI C header files
configure:8892: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8892: $? = 0
configure:8965: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c  >&5
configure:8965: $? = 0
configure:8965: ./conftest
configure:8965: $? = 0
configure:8976: result: yes
configure:8989: checking for sys/types.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for sys/stat.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for stdlib.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for string.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for memory.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for strings.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for inttypes.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for stdint.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for unistd.h
configure:8989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:9003: checking for dlfcn.h
configure:9003: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:9003: $? = 0
configure:9003: result: yes
configure:9259: checking for objdir
configure:9274: result: .libs
configure:9538: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc supports -fno-rtti -fno-exceptions
configure:9556: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:9560: $? = 0
configure:9573: result: no
configure:9931: checking for /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc option to produce PIC
configure:9938: result: -fPIC -DPIC
configure:9946: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc PIC flag -fPIC -DPIC works
configure:9964: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -fPIC -DPIC -DPIC conftest.c >&5
configure:9968: $? = 0
configure:9981: result: yes
configure:10010: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc static flag -static works
configure:10038: result: no
configure:10053: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc supports -c -o file.o
configure:10074: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -o out/conftest2.o conftest.c >&5
configure:10078: $? = 0
configure:10100: result: yes
configure:10108: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc supports -c -o file.o
configure:10155: result: yes
configure:10188: checking whether the /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:11451: result: yes
configure:11488: checking whether -lc should be explicitly linked in
configure:11496: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:11499: $? = 0
configure:11514: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep  -lc  \>/dev/null 2\>\&1
configure:11517: $? = 0
configure:11531: result: no
configure:11691: checking dynamic linker characteristics
configure:12272: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:12272: $? = 0
configure:12521: result: GNU/Linux ld.so
configure:12643: checking how to hardcode library paths into programs
configure:12668: result: immediate
configure:13216: checking whether stripping libraries is possible
configure:13221: result: yes
configure:13256: checking if libtool supports shared libraries
configure:13258: result: yes
configure:13261: checking whether to build shared libraries
configure:13286: result: yes
configure:13289: checking whether to build static libraries
configure:13293: result: yes
configure:13331: checking whether ln -s works
configure:13335: result: yes
configure:13346: checking for cp
configure:13364: found /usr/bin/cp
configure:13376: result: /usr/bin/cp
configure:13395: checking for tar
configure:13413: found /usr/bin/tar
configure:13425: result: /usr/bin/tar
configure:13446: checking for wget
configure:13464: found /usr/bin/wget
configure:13476: result: /usr/bin/wget
configure:13714: checking for gcc
configure:13741: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:13970: checking for C compiler version
configure:13979: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc --version >&5
gcc (Spack GCC) 5.4.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13990: $? = 0
configure:13979: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -v >&5
Reading specs from /opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/specs
COLLECT_GCC=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/bin/gcc
COLLECT_LTO_WRAPPER=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /dev/shm/gpjohnsn/spack-stage-gcc-5.4.0-btz6b3gjw4d3lopwpyt6lh6eyaj2omhr/spack-src/configure --prefix=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g --with-pkgversion='Spack GCC' --with-bugurl=https://github.com/spack/spack/issues --disable-multilib --enable-languages=c,c++,fortran --disable-nls --with-mpfr-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/include --with-mpfr-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib --with-gmp-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/include --with-gmp-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib --with-mpc-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/include --with-mpc-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib --with-isl-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/include --with-isl-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib --with-stage1-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib' --with-boot-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib -static-libstdc++ -static-libgcc'
Thread model: posix
gcc version 5.4.0 (Spack GCC) 
configure:13990: $? = 0
configure:13979: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:13990: $? = 1
configure:13979: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:13990: $? = 1
configure:13994: checking whether we are using the GNU C compiler
configure:14022: result: yes
configure:14031: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -g
configure:14092: result: yes
configure:14109: checking for /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc option to accept ISO C89
configure:14185: result: none needed
configure:14210: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc understands -c and -o together
configure:14247: result: yes
configure:14266: checking dependency style of /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:14377: result: none
configure:14504: checking for C++ compiler version
configure:14513: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx --version >&5
g++ (Spack GCC) 5.4.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:14524: $? = 0
configure:14513: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -v >&5
Reading specs from /opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/specs
COLLECT_GCC=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/bin/g++
COLLECT_LTO_WRAPPER=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /dev/shm/gpjohnsn/spack-stage-gcc-5.4.0-btz6b3gjw4d3lopwpyt6lh6eyaj2omhr/spack-src/configure --prefix=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g --with-pkgversion='Spack GCC' --with-bugurl=https://github.com/spack/spack/issues --disable-multilib --enable-languages=c,c++,fortran --disable-nls --with-mpfr-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/include --with-mpfr-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib --with-gmp-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/include --with-gmp-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib --with-mpc-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/include --with-mpc-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib --with-isl-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/include --with-isl-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib --with-stage1-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib' --with-boot-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib -static-libstdc++ -static-libgcc'
Thread model: posix
gcc version 5.4.0 (Spack GCC) 
configure:14524: $? = 0
configure:14513: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:14524: $? = 1
configure:14513: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:14524: $? = 1
configure:14528: checking whether we are using the GNU C++ compiler
configure:14547: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c  -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:14547: $? = 0
configure:14556: result: yes
configure:14565: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx accepts -g
configure:14585: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:14585: $? = 0
configure:14626: result: yes
configure:14651: checking dependency style of /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx
configure:14762: result: none
configure:14795: checking how to run the C++ preprocessor
configure:14822: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
configure:14822: $? = 0
configure:14836: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:14836: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:14861: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E
configure:14881: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
configure:14881: $? = 0
configure:14895: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:14895: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:15057: checking for ld used by /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx
configure:15124: result: /usr/bin/ld -m elf_x86_64
configure:15131: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:15146: result: yes
configure:15201: checking whether the /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:16274: result: yes
configure:16310: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:16313: $? = 0
configure:16794: checking for /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx option to produce PIC
configure:16801: result: -fPIC -DPIC
configure:16809: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx PIC flag -fPIC -DPIC works
configure:16827: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -fPIC -DPIC -DPIC conftest.cpp >&5
configure:16831: $? = 0
configure:16844: result: yes
configure:16867: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx static flag -static works
configure:16895: result: no
configure:16907: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx supports -c -o file.o
configure:16928: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -o out/conftest2.o conftest.cpp >&5
configure:16932: $? = 0
configure:16954: result: yes
configure:16959: checking if /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx supports -c -o file.o
configure:17006: result: yes
configure:17036: checking whether the /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:17079: result: yes
configure:17220: checking dynamic linker characteristics
configure:17977: result: GNU/Linux ld.so
configure:18042: checking how to hardcode library paths into programs
configure:18067: result: immediate
configure:18112: checking how to run the C++ preprocessor
configure:18178: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E
configure:18198: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
configure:18198: $? = 0
configure:18212: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:18212: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:21577: checking zlib.h usability
configure:21577: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5
configure:21577: $? = 0
configure:21577: result: yes
configure:21577: checking zlib.h presence
configure:21577: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c
configure:21577: $? = 0
configure:21577: result: yes
configure:21577: checking for zlib.h
configure:21577: result: yes
configure:22175: checking for deflate in -lz
configure:22200: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lz   >&5
configure:22200: $? = 0
configure:22209: result: yes
configure:22273: checking for mpicc
configure:22303: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
configure:22320: checking for mpicxx
configure:22350: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpic++
configure:22734: checking for proj
configure:22767: result: no
configure:22776: checking for unzip
configure:22794: found /usr/bin/unzip
configure:22806: result: /usr/bin/unzip
configure:22951: checking hdf5.h usability
configure:22951: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:22951: $? = 0
configure:22951: result: yes
configure:22951: checking hdf5.h presence
configure:22951: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
configure:22951: $? = 0
configure:22951: result: yes
configure:22951: checking for hdf5.h
configure:22951: result: yes
configure:22969: checking for H5Fopen in -lhdf5
configure:22982: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:22982: $? = 0
configure:22983: result: yes
configure:23000: checking for library containing H5Pset_dxpl_mpio
configure:23031: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.cpp -lz  >&5
/localscratch/ccFmEEUM.o: In function `main':
/Users/gcheng6/build/pylith/conftest.cpp:35: undefined reference to `H5Pset_dxpl_mpio'
collect2: error: ld returned 1 exit status
configure:23031: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "PyLith Installer"
| #define PACKAGE_TARNAME "pylith-installer"
| #define PACKAGE_VERSION "2.2.2-0"
| #define PACKAGE_STRING "PyLith Installer 2.2.2-0"
| #define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
| #define PACKAGE_URL ""
| #define PACKAGE "pylith-installer"
| #define VERSION "2.2.2-0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_LIBZ 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Pset_dxpl_mpio ();
| int
| main ()
| {
| return H5Pset_dxpl_mpio ();
|   ;
|   return 0;
| }
configure:23031: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -o conftest -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.cpp -lhdf5  -lz  >&5
configure:23031: $? = 0
configure:23048: result: -lhdf5
configure:23446: checking netcdfcpp.h usability
configure:23446: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:23446: $? = 0
configure:23446: result: yes
configure:23446: checking netcdfcpp.h presence
configure:23446: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp
configure:23446: $? = 0
configure:23446: result: yes
configure:23446: checking for netcdfcpp.h
configure:23446: result: yes
configure:23464: checking for NcFile in -lnetcdfc++
configure:23477: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -c -g -O2 -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.cpp >&5
configure:23477: $? = 0
configure:23478: result: yes
configure:24195: checking for nemesis
configure:24228: result: no
configure:24289: checking for unzip
configure:24319: result: /usr/bin/unzip
configure:24395: checking for gensimpledb.py
configure:24428: result: no
configure:24539: checking for pylith
configure:24572: result: no
configure:24841: checking that generated files are newer than configure
configure:24847: result: done
configure:25026: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by PyLith Installer config.status 2.2.2-0, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on argon-login-1.hpc

config.status:1275: creating Makefile
config.status:1432: executing depfiles commands
config.status:1432: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value='-I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_PETSC_ARCH_set=
ac_cv_env_PETSC_ARCH_value=
ac_cv_env_PETSC_DIR_set=
ac_cv_env_PETSC_DIR_value=
ac_cv_env_PYTHON_set=
ac_cv_env_PYTHON_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdfcpp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_z_deflate=yes
ac_cv_objext=o
ac_cv_path_CP=/usr/bin/cp
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_MPICC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
ac_cv_path_MPICXX=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpic++
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_TAR=/usr/bin/tar
ac_cv_path_UNZIP=/usr/bin/unzip
ac_cv_path_WGET=/usr/bin/wget
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/usr/bin/dd
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E'
ac_cv_prog_CXXCPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5Pset_dxpl_mpio=-lhdf5
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
am_cv_prog_tar_pax=gnutar
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=3458764513820540925
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/missing autoconf'
AUTOHEADER='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/missing autoheader'
AUTOMAKE='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/missing automake-1.15'
AUTORECONF=''
AWK='gawk'
CC='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc'
CCDEPMODE='depmode=none'
CFLAGS='-g -O2'
CP='/usr/bin/cp'
CPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E'
CPPFLAGS='-I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include'
CURL=''
CXX='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx'
CXXCPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx -E'
CXXDEPMODE='depmode=none'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DPACKAGE_NAME=\"PyLith\ Installer\" -DPACKAGE_TARNAME=\"pylith-installer\" -DPACKAGE_VERSION=\"2.2.2-0\" -DPACKAGE_STRING=\"PyLith\ Installer\ 2.2.2-0\" -DPACKAGE_BUGREPORT=\"cig-short@geodynamics.org\" -DPACKAGE_URL=\"\" -DPACKAGE=\"pylith-installer\" -DVERSION=\"2.2.2-0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBZ=1'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
FC=''
FCFLAGS=''
FGREP='/usr/bin/grep -F'
GIT=''
GREP='/usr/bin/grep'
INSTALL_AUTOTOOLS_FALSE=''
INSTALL_AUTOTOOLS_TRUE='#'
INSTALL_CMAKE_FALSE='#'
INSTALL_CMAKE_TRUE=''
INSTALL_CPPUNIT_FALSE='#'
INSTALL_CPPUNIT_TRUE=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_FIAT_FALSE='#'
INSTALL_FIAT_TRUE=''
INSTALL_GCC_FALSE=''
INSTALL_GCC_TRUE='#'
INSTALL_H5PY_FALSE='#'
INSTALL_H5PY_TRUE=''
INSTALL_HDF5_FALSE=''
INSTALL_HDF5_TRUE='#'
INSTALL_MPICH_FALSE=''
INSTALL_MPICH_TRUE='#'
INSTALL_MPI_FALSE=''
INSTALL_MPI_TRUE='#'
INSTALL_NEMESIS_FALSE='#'
INSTALL_NEMESIS_TRUE=''
INSTALL_NETCDFPY_FALSE='#'
INSTALL_NETCDFPY_TRUE=''
INSTALL_NETCDF_FALSE=''
INSTALL_NETCDF_TRUE='#'
INSTALL_NUMPY_FALSE='#'
INSTALL_NUMPY_TRUE=''
INSTALL_OPENMPI_FALSE=''
INSTALL_OPENMPI_TRUE='#'
INSTALL_OPENSSL_FALSE=''
INSTALL_OPENSSL_TRUE='#'
INSTALL_PARAMETERSGUI_FALSE='#'
INSTALL_PARAMETERSGUI_TRUE=''
INSTALL_PCRE_FALSE=''
INSTALL_PCRE_TRUE='#'
INSTALL_PETSC_FALSE='#'
INSTALL_PETSC_TRUE=''
INSTALL_PROGRAM='${INSTALL}'
INSTALL_PROJ4_FALSE='#'
INSTALL_PROJ4_TRUE=''
INSTALL_PYTHIA_FALSE='#'
INSTALL_PYTHIA_TRUE=''
INSTALL_PYTHON_FALSE='#'
INSTALL_PYTHON_TRUE=''
INSTALL_SCRIPT='${INSTALL}'
INSTALL_SETUPTOOLS_FALSE='#'
INSTALL_SETUPTOOLS_TRUE=''
INSTALL_SIX_FALSE=''
INSTALL_SIX_TRUE='#'
INSTALL_SPATIALDATA_FALSE='#'
INSTALL_SPATIALDATA_TRUE=''
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTALL_SWIG_FALSE=''
INSTALL_SWIG_TRUE='#'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib'
LIBOBJS=''
LIBS='-lhdf5 -lz '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAKEINFO='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
MPICC='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc'
MPICXX='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpic++'
MPIF90='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpif90'
NEMESIS=''
NM='/usr/bin/nm -B'
NMEDIT=''
NUMPY_INCDIR=''
NVCC=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='pylith-installer'
PACKAGE_BUGREPORT='cig-short@geodynamics.org'
PACKAGE_NAME='PyLith Installer'
PACKAGE_STRING='PyLith Installer 2.2.2-0'
PACKAGE_TARNAME='pylith-installer'
PACKAGE_URL=''
PACKAGE_VERSION='2.2.2-0'
PATH_SEPARATOR=':'
PCRETEST=''
PETSC_ARCH='arch-pylith'
PETSC_CC=''
PETSC_CC_INCLUDES=''
PETSC_CXX=''
PETSC_CXX_INCLUDE=''
PETSC_CXX_LIB=''
PETSC_DIR='/Users/gcheng6/pylith'
PETSC_FC=''
PETSC_FC_INCLUDES=''
PETSC_FORTRAN_LIB=''
PETSC_LIB=''
PETSC_MPI_INCLUDE=''
PETSC_MPI_LIB=''
PETSC_SIEVE_FLAGS=''
PETSC_TARBALL_FALSE='#'
PETSC_TARBALL_TRUE=''
PETSC_VERSION_MAJOR=''
PETSC_VERSION_MINOR=''
PETSC_VERSION_SUBMINOR=''
PYTHON='/Users/gcheng6/pylith/bin/python'
PYTHON_BLDLIBRARY=''
PYTHON_CPPFLAGS=''
PYTHON_EXEC_PREFIX=''
PYTHON_INCDIR=''
PYTHON_LA_LDFLAGS=''
PYTHON_LDFLAGS=''
PYTHON_LDLAST=''
PYTHON_LDLIBRARY=''
PYTHON_LIBDIR=''
PYTHON_LIBP=''
PYTHON_LIBPL=''
PYTHON_LIBS=''
PYTHON_LINKFORSHARED=''
PYTHON_MODLIBS=''
PYTHON_PLATFORM=''
PYTHON_PREFIX=''
PYTHON_SYSLIBS=''
PYTHON_VERSION='2.7'
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SWIG=''
SWIG_LIB=''
TAR='/usr/bin/tar'
UNZIP='/usr/bin/unzip'
USE_PYLITH_GIT_FALSE=''
USE_PYLITH_GIT_TRUE='#'
VERSION='2.2.2-0'
WGET='/usr/bin/wget'
WITH_CUDA_FALSE=''
WITH_CUDA_TRUE='#'
WITH_DEBUGGING_FALSE=''
WITH_DEBUGGING_TRUE='#'
WITH_FORTRAN_FALSE=''
WITH_FORTRAN_TRUE='#'
WITH_H5PY_FALSE='#'
WITH_H5PY_TRUE=''
WITH_HDF5_FALSE='#'
WITH_HDF5_TRUE=''
WITH_NETCDFPY_FALSE='#'
WITH_NETCDFPY_TRUE=''
WITH_NETCDF_FALSE='#'
WITH_NETCDF_TRUE=''
WITH_NUMPY_BLASLAPACK_FALSE=''
WITH_NUMPY_BLASLAPACK_TRUE='#'
WITH_SWIG_FALSE=''
WITH_SWIG_TRUE='#'
WITH_TESTING_FALSE='#'
WITH_TESTING_TRUE=''
_cv_PYTHON_INCDIR=''
ac_ct_AR='ar'
ac_ct_CC='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='tar --format=posix -chf - "$$tardir"'
am__untar='tar -xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
downloader='/usr/bin/wget -nd -r -O'
dvidir='${docdir}'
exec_prefix='${prefix}'
existing_hdf5=''
existing_mpi=''
existing_nemesis=''
existing_netcdf=''
existing_petsc=''
existing_proj4=''
existing_pylith=''
existing_spatialdata=''
force_petsc_tarball='no'
gcc_languages=''
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /Users/gcheng6/src/pylith/pylith-installer-2.2.2-0/aux-config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
make_threads='2'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
mpich_sharedarch=''
oldincludedir='/usr/include'
pdfdir='${docdir}'
petsc_git='no'
petsc_options='--download-chaco=1 --download-ml=1 --download-f2cblaslapack=1'
pkgpyexecdir=''
pkgpythondir=''
prefix='/Users/gcheng6/pylith'
prefix_deps='/Users/gcheng6/pylith'
program_transform_name='s,x,x,'
psdir='${docdir}'
pyexecdir=''
pylith_git='no'
pylith_repo='https://github.com/geodynamics/pylith.git'
pythondir=''
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
spatialdata_repo='https://github.com/geodynamics/spatialdata.git'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "PyLith Installer"
#define PACKAGE_TARNAME "pylith-installer"
#define PACKAGE_VERSION "2.2.2-0"
#define PACKAGE_STRING "PyLith Installer 2.2.2-0"
#define PACKAGE_BUGREPORT "cig-short@geodynamics.org"
#define PACKAGE_URL ""
#define PACKAGE "pylith-installer"
#define VERSION "2.2.2-0"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBZ 1

configure: exit 0