---------------------------------------- Begin Torque Prologue (Tue Dec 24 01:38:50 2019) Job ID: 10067904.cc-mgmt1.campuscluster.illinois.edu Username: meguid Group: cee-sem Job Name: jobname Limits: nodes=10:ppn=4,walltime=04:00:00,neednodes=10:ppn=4 Job Queue: secondary Account: cee-sem Nodes: golub309 golub312 golub314 golub329 golub335 golub339 golub341 golub343 golub344 golub345 End Torque Prologue ---------------------------------------- -------------------------------------------------------------------------- A process has executed an operation involving a call to the "fork()" system call to create a child process. Open MPI is currently operating in a condition that could result in memory corruption or other system errors; your job may hang, crash, or produce silent data corruption. The use of fork() (or system() or other calls that create child processes) is strongly discouraged. The process that invoked fork was: Local host: [[3186,1],1] (PID 38000) If you are *absolutely sure* that your application will successfully and correctly survive a call to fork(), you may disable this warning by setting the mpi_warn_on_fork MCA parameter to 0. -------------------------------------------------------------------------- [golub329:37993] 39 more processes have sent help message help-opal-runtime.txt / opal_init:warn-fork [golub329:37993] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [20]PETSC ERROR: ------------------------------------------------------------------------ [20]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [20]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [20]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [20]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [20]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [20]PETSC ERROR: to get more information on the crash. [20]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [20]PETSC ERROR: Signal received [20]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [20]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [20]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 [20]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [20]PETSC ERROR: #1 User provided function() line 0 in unknown file [15]PETSC ERROR: ------------------------------------------------------------------------ [15]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [15]PETSC ERROR: to get more information on the crash. [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Signal received [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [15]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [15]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [15]PETSC ERROR: #1 User provided function() line 0 in unknown file [12]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [11]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Signal received [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [11]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [11]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [11]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [11]PETSC ERROR: #1 User provided function() line 0 in unknown file Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: [25]PETSC ERROR: ------------------------------------------------------------------------ [25]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [25]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [25]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [25]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [25]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [25]PETSC ERROR: to get more information on the crash. to get more information on the crash. [12]PETSC ERROR: [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: Signal received [25]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [25]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [39]PETSC ERROR: [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [25]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [25]PETSC ERROR: Signal received [9]PETSC ERROR: #1 User provided function() line 0 in unknown file ------------------------------------------------------------------------ [12]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: [39]PETSC ERROR: [9]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: [4]PETSC ERROR: [9]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 ------------------------------------------------------------------------ Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [29]PETSC ERROR: to get more information on the crash. [38]PETSC ERROR: [9]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [22]PETSC ERROR: [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: [4]PETSC ERROR: [39]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [39]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [39]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [39]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [39]PETSC ERROR: to get more information on the crash. [9]PETSC ERROR: [32]PETSC ERROR: #1 User provided function() line 0 in unknown file Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ configure using --with-debugging=yes, recompile, link, and run [34]PETSC ERROR: ------------------------------------------------------------------------ [34]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [34]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [34]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [34]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [34]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: ------------------------------------------------------------------------ [38]PETSC ERROR: [9]PETSC ERROR: [34]PETSC ERROR: to get more information on the crash. Try option -start_in_debugger or -on_error_attach_debugger [22]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range to get more information on the crash. ------------------------------------------------------------------------ [32]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [32]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [28]PETSC ERROR: [38]PETSC ERROR: [9]PETSC ERROR: [34]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [22]PETSC ERROR: ------------------------------------------------------------------------ Try option -start_in_debugger or -on_error_attach_debugger --------------------- Error Message -------------------------------------------------------------- [32]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [32]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [32]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [32]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: [38]PETSC ERROR: [9]PETSC ERROR: [32]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [32]PETSC ERROR: Signal received [32]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [22]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Signal received See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [32]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [32]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [32]PETSC ERROR: [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [28]PETSC ERROR: [38]PETSC ERROR: [9]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [32]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [22]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #1 User provided function() line 0 in unknown file [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- to get more information on the crash. [22]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind configure using --with-debugging=yes, recompile, link, and run ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [8]PETSC ERROR: [34]PETSC ERROR: [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [28]PETSC ERROR: [38]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run Signal received --------------------- Error Message -------------------------------------------------------------- [22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors to get more information on the crash. [8]PETSC ERROR: to get more information on the crash. [34]PETSC ERROR: [4]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: [38]PETSC ERROR: [9]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [9]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [9]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Signal received [22]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: [34]PETSC ERROR: [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: [38]PETSC ERROR: [9]PETSC ERROR: #1 User provided function() line 0 in unknown file Petsc Release Version 3.10.2, Jul, 01, 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [22]PETSC ERROR: to get more information on the crash. Signal received --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: [4]PETSC ERROR: Signal received [28]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 [22]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Signal received [34]PETSC ERROR: [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: [16]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [22]PETSC ERROR: Signal received ------------------------------------------------------------------------ Petsc Release Version 3.10.2, Jul, 01, 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [34]PETSC ERROR: [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: [16]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: #1 User provided function() line 0 in unknown file Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [22]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 [35]PETSC ERROR: [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 [28]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: ------------------------------------------------------------------------ #1 User provided function() line 0 in unknown file [22]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 Try option -start_in_debugger or -on_error_attach_debugger ------------------------------------------------------------------------ Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [35]PETSC ERROR: [5]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [28]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [38]PETSC ERROR: [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ [22]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range #1 User provided function() line 0 in unknown file Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [35]PETSC ERROR: [5]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Try option -start_in_debugger or -on_error_attach_debugger --------------------- Error Message -------------------------------------------------------------- #1 User provided function() line 0 in unknown file [35]PETSC ERROR: [5]PETSC ERROR: [28]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Try option -start_in_debugger or -on_error_attach_debugger #1 User provided function() line 0 in unknown file configure using --with-debugging=yes, recompile, link, and run or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Signal received [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind ------------------------------------------------------------------------ to get more information on the crash. or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range --------------------- Error Message -------------------------------------------------------------- configure using --with-debugging=yes, recompile, link, and run Petsc Release Version 3.10.2, Jul, 01, 2019 [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: to get more information on the crash. configure using --with-debugging=yes, recompile, link, and run Try option -start_in_debugger or -on_error_attach_debugger Signal received to get more information on the crash. /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- to get more information on the crash. or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. --------------------- Error Message -------------------------------------------------------------- Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: [39]PETSC ERROR: Signal received --------------------- Error Message -------------------------------------------------------------- or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Petsc Release Version 3.10.2, Jul, 01, 2019 Signal received #1 User provided function() line 0 in unknown file [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Signal received configure using --with-debugging=yes, recompile, link, and run /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. to get more information on the crash. Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Petsc Release Version 3.10.2, Jul, 01, 2019 [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [16]PETSC ERROR: [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 --------------------- Error Message -------------------------------------------------------------- #1 User provided function() line 0 in unknown file /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 Signal received Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [35]PETSC ERROR: [5]PETSC ERROR: [31]PETSC ERROR: [26]PETSC ERROR: #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: [31]PETSC ERROR: #1 User provided function() line 0 in unknown file Petsc Release Version 3.10.2, Jul, 01, 2019 [31]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [31]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [31]PETSC ERROR: #1 User provided function() line 0 in unknown file [20]PETSC ERROR: ------------------------------------------------------------------------ [20]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [20]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [20]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [20]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [20]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [20]PETSC ERROR: to get more information on the crash. [20]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [20]PETSC ERROR: Signal received [20]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [20]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [20]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 [20]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [20]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [5]PETSC ERROR: to get more information on the crash. [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Signal received [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [5]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [5]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [5]PETSC ERROR: #1 User provided function() line 0 in unknown file [15]PETSC ERROR: ------------------------------------------------------------------------ [15]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [15]PETSC ERROR: to get more information on the crash. [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Signal received [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [15]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [15]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [15]PETSC ERROR: #1 User provided function() line 0 in unknown file [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [11]PETSC ERROR: to get more information on the crash. [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Signal received [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [11]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [11]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [11]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [11]PETSC ERROR: #1 User provided function() line 0 in unknown file [38]PETSC ERROR: ------------------------------------------------------------------------ [38]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [38]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [38]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [38]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [38]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [38]PETSC ERROR: to get more information on the crash. [38]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [38]PETSC ERROR: Signal received [38]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [38]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [38]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [38]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [38]PETSC ERROR: #1 User provided function() line 0 in unknown file [32]PETSC ERROR: ------------------------------------------------------------------------ [32]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [22]PETSC ERROR: [32]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger ------------------------------------------------------------------------ [32]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [22]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [32]PETSC ERROR: [22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Try option -start_in_debugger or -on_error_attach_debugger [32]PETSC ERROR: [22]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [32]PETSC ERROR: to get more information on the crash. [22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [32]PETSC ERROR: [22]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- configure using --with-debugging=yes, recompile, link, and run [32]PETSC ERROR: [22]PETSC ERROR: Signal received to get more information on the crash. [32]PETSC ERROR: [22]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. --------------------- Error Message -------------------------------------------------------------- [32]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [22]PETSC ERROR: Signal received [32]PETSC ERROR: [22]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [32]PETSC ERROR: [22]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Petsc Release Version 3.10.2, Jul, 01, 2019 [32]PETSC ERROR: [22]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 #1 User provided function() line 0 in unknown file [22]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [22]PETSC ERROR: #1 User provided function() line 0 in unknown file [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [9]PETSC ERROR: to get more information on the crash. [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Signal received [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [9]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [9]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [9]PETSC ERROR: #1 User provided function() line 0 in unknown file [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [8]PETSC ERROR: to get more information on the crash. [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Signal received [8]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [8]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [8]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [8]PETSC ERROR: #1 User provided function() line 0 in unknown file [38]PETSC ERROR: ------------------------------------------------------------------------ [38]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [38]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [38]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [38]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [38]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [38]PETSC ERROR: to get more information on the crash. [38]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [38]PETSC ERROR: Signal received [38]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [38]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [38]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [38]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [38]PETSC ERROR: #1 User provided function() line 0 in unknown file [39]PETSC ERROR: ------------------------------------------------------------------------ [39]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [39]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [39]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [39]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [39]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [39]PETSC ERROR: to get more information on the crash. [39]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [39]PETSC ERROR: Signal received [39]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [39]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [39]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [39]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [39]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [28]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [28]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [28]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: Signal received [28]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [28]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [28]PETSC ERROR: #1 User provided function() line 0 in unknown file [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [7]PETSC ERROR: to get more information on the crash. [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Signal received [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [7]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [7]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [7]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [28]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [28]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [28]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: Signal received [28]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [28]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [6]PETSC ERROR: to get more information on the crash. [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: [28]PETSC ERROR: Signal received [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [6]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [6]PETSC ERROR: #1 User provided function() line 0 in unknown file Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [6]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [16]PETSC ERROR: ------------------------------------------------------------------------ [16]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [16]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [16]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [16]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [16]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [16]PETSC ERROR: to get more information on the crash. [16]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [16]PETSC ERROR: Signal received [16]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [16]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [16]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 [16]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [16]PETSC ERROR: #1 User provided function() line 0 in unknown file [13]PETSC ERROR: ------------------------------------------------------------------------ [13]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [13]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [13]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [13]PETSC ERROR: to get more information on the crash. [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Signal received [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [13]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [13]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [34]PETSC ERROR: ------------------------------------------------------------------------ [34]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [34]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [34]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [34]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [34]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [34]PETSC ERROR: to get more information on the crash. [34]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: Signal received [34]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [34]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [34]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [34]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [34]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [24]PETSC ERROR: to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [14]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [14]PETSC ERROR: to get more information on the crash. [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Signal received [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [14]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [14]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [14]PETSC ERROR: #1 User provided function() line 0 in unknown file [34]PETSC ERROR: ------------------------------------------------------------------------ [34]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [34]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [34]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [34]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [34]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [34]PETSC ERROR: to get more information on the crash. [34]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: Signal received [34]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [34]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [34]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [34]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [34]PETSC ERROR: #1 User provided function() line 0 in unknown file [38]PETSC ERROR: ------------------------------------------------------------------------ [38]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [38]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [38]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [38]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [38]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [38]PETSC ERROR: to get more information on the crash. [38]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [38]PETSC ERROR: Signal received [38]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [38]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [38]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [38]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: [38]PETSC ERROR: #1 User provided function() line 0 in unknown file ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: [30]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: ------------------------------------------------------------------------ Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [30]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [30]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [30]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [30]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [30]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [30]PETSC ERROR: to get more information on the crash. [30]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [30]PETSC ERROR: Signal received [30]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [30]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [30]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [30]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [30]PETSC ERROR: #1 User provided function() line 0 in unknown file [19]PETSC ERROR: ------------------------------------------------------------------------ [19]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [19]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [19]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [19]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [19]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [19]PETSC ERROR: to get more information on the crash. [19]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [19]PETSC ERROR: Signal received [19]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [19]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [19]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 [19]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [19]PETSC ERROR: #1 User provided function() line 0 in unknown file [18]PETSC ERROR: ------------------------------------------------------------------------ [18]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [18]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [18]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [18]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [18]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [18]PETSC ERROR: to get more information on the crash. [18]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [18]PETSC ERROR: Signal received [18]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [18]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [18]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 [18]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [18]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [16]PETSC ERROR: ------------------------------------------------------------------------ [16]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [16]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [16]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [16]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [16]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [16]PETSC ERROR: to get more information on the crash. [16]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [16]PETSC ERROR: Signal received [16]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [16]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [16]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 [16]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [16]PETSC ERROR: #1 User provided function() line 0 in unknown file WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakeningSlip weakening'. Using default value of zero. '. Using default value of zero.Slip weakeningWARNING: No initial state given for friction model 'WARNING: No initial state given for friction model ' WARNING: No initial state given for friction model 'Slip weakeningWARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. Slip weakening'. Using default value of zero.'. Using default value of zero.Slip weakening '. Using default value of zero.'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. Slip weakeningWARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. '. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakeningWARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. '. Using default value of zero.WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model ' WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. Slip weakeningWARNING: No initial state given for friction model ''. Using default value of zero.WARNING: No initial state given for friction model 'Slip weakening '. Using default value of zero.WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. Slip weakening Slip weakening'. Using default value of zero.WARNING: No initial state given for friction model ' Slip weakening'. Using default value of zero. '. Using default value of zero.WARNING: No initial state given for friction model ' WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. Slip weakening'. Using default value of zero.WARNING: No initial state given for friction model ' WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakeningSlip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.'. Using default value of zero. Slip weakeningSlip weakeningWARNING: No initial state given for friction model ''. Using default value of zero.Slip weakeningWARNING: No initial state given for friction model ''. Using default value of zero.Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model ' '. Using default value of zero. Slip weakening WARNING: No initial state given for friction model ' '. Using default value of zero.Slip weakeningSlip weakening '. Using default value of zero.'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [29]PETSC ERROR: to get more information on the crash. [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [29]PETSC ERROR: to get more information on the crash. [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: [31]PETSC ERROR: ------------------------------------------------------------------------ [31]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [31]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [31]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [31]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [31]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [29]PETSC ERROR: to get more information on the crash. [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file [30]PETSC ERROR: ------------------------------------------------------------------------ [30]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [31]PETSC ERROR: to get more information on the crash. Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [30]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [30]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [30]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [30]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [30]PETSC ERROR: to get more information on the crash. [30]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [30]PETSC ERROR: Signal received [30]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [30]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [30]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [30]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [30]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [28]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [28]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [28]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: Signal received [28]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [28]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [28]PETSC ERROR: #1 User provided function() line 0 in unknown file [31]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [31]PETSC ERROR: Signal received [31]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [31]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [31]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [31]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [31]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run ------------------------------------------------------------------------ [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: [31]PETSC ERROR: ------------------------------------------------------------------------ [31]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [31]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [31]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [31]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [31]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [31]PETSC ERROR: to get more information on the crash. [31]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [31]PETSC ERROR: Signal received [31]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ [29]PETSC ERROR: to get more information on the crash. [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: [33]PETSC ERROR: ------------------------------------------------------------------------ Try option -start_in_debugger or -on_error_attach_debugger Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind configure using --with-debugging=yes, recompile, link, and run or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors to get more information on the crash. configure using --with-debugging=yes, recompile, link, and run [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run --------------------- Error Message -------------------------------------------------------------- to get more information on the crash. [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: to get more information on the crash. Signal received --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Signal received [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: Signal received Petsc Release Version 3.10.2, Jul, 01, 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [28]PETSC ERROR: [24]PETSC ERROR: [33]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 #1 User provided function() line 0 in unknown file Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [28]PETSC ERROR: [33]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith #1 User provided function() line 0 in unknown file [28]PETSC ERROR: #1 User provided function() line 0 in unknown file [31]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [31]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [31]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [31]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [25]PETSC ERROR: ------------------------------------------------------------------------ [25]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [25]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [25]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [25]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [25]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [25]PETSC ERROR: to get more information on the crash. ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: Signal received [25]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [25]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [25]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [25]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [25]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: #1 User provided function() line 0 in unknown file Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger ------------------------------------------------------------------------ [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Try option -start_in_debugger or -on_error_attach_debugger [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run configure using --with-debugging=yes, recompile, link, and run configure using --with-debugging=yes, recompile, link, and run or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: to get more information on the crash. to get more information on the crash. to get more information on the crash. or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- --------------------- Error Message -------------------------------------------------------------- --------------------- Error Message -------------------------------------------------------------- configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: Signal received Signal received Signal received to get more information on the crash. [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 Signal received [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Petsc Release Version 3.10.2, Jul, 01, 2019 [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [24]PETSC ERROR: #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [24]PETSC ERROR: to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith ------------------------------------------------------------------------ [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [25]PETSC ERROR: ------------------------------------------------------------------------ [25]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: [25]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [25]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [25]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [25]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [25]PETSC ERROR: to get more information on the crash. or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: Signal received [25]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [25]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: [25]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 to get more information on the crash. [25]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: Signal received [33]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [33]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [33]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [24]PETSC ERROR: to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file ------------------------------------------------------------------------ [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [12]PETSC ERROR: [33]PETSC ERROR: ------------------------------------------------------------------------ ------------------------------------------------------------------------ [33]PETSC ERROR: [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: to get more information on the crash. [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: Signal received [33]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [33]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [33]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range #1 User provided function() line 0 in unknown file [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: ------------------------------------------------------------------------ [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: ------------------------------------------------------------------------ or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range to get more information on the crash. [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [33]PETSC ERROR: [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: [12]PETSC ERROR: Signal received or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 to get more information on the crash. [33]PETSC ERROR: [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Signal received [33]PETSC ERROR: [12]PETSC ERROR: #1 User provided function() line 0 in unknown file See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [24]PETSC ERROR: to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: ------------------------------------------------------------------------ [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: to get more information on the crash. [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: Signal received [33]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [33]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [33]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [24]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [24]PETSC ERROR: to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [30]PETSC ERROR: ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [4]PETSC ERROR: [30]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: ------------------------------------------------------------------------ [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run configure using --with-debugging=yes, recompile, link, and run configure using --with-debugging=yes, recompile, link, and run Try option -start_in_debugger or -on_error_attach_debugger [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: [24]PETSC ERROR: to get more information on the crash. to get more information on the crash. to get more information on the crash. to get more information on the crash. [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: [24]PETSC ERROR: Signal received [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 --------------------- Error Message -------------------------------------------------------------- --------------------- Error Message -------------------------------------------------------------- --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: [24]PETSC ERROR: #1 User provided function() line 0 in unknown file Signal received Signal received Signal received [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: to get more information on the crash. Petsc Release Version 3.10.2, Jul, 01, 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: [30]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [30]PETSC ERROR: Signal received Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: [33]PETSC ERROR: [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [30]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [26]PETSC ERROR: to get more information on the crash. #1 User provided function() line 0 in unknown file [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [1]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [23]PETSC ERROR: [12]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [12]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith ------------------------------------------------------------------------ [29]PETSC ERROR: ------------------------------------------------------------------------ [29]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [29]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [29]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [29]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [29]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [29]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: #1 User provided function() line 0 in unknown file or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [23]PETSC ERROR: [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Signal received [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [29]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [29]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [29]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [23]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [23]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [23]PETSC ERROR: ------------------------------------------------------------------------ or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: [4]PETSC ERROR: [23]PETSC ERROR: [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [23]PETSC ERROR: [33]PETSC ERROR: [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger to get more information on the crash. ------------------------------------------------------------------------ [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: [23]PETSC ERROR: [24]PETSC ERROR: [13]PETSC ERROR: [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [7]PETSC ERROR: to get more information on the crash. configure using --with-debugging=yes, recompile, link, and run Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: ------------------------------------------------------------------------ [13]PETSC ERROR: [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: [23]PETSC ERROR: to get more information on the crash. Try option -start_in_debugger or -on_error_attach_debugger [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: #1 User provided function() line 0 in unknown file Signal received [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [13]PETSC ERROR: [7]PETSC ERROR: Signal received [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [7]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [23]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: ------------------------------------------------------------------------ Try option -start_in_debugger or -on_error_attach_debugger [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [23]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [10]PETSC ERROR: [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: [23]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [10]PETSC ERROR: [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [13]PETSC ERROR: [23]PETSC ERROR: to get more information on the crash. [10]PETSC ERROR: [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [13]PETSC ERROR: to get more information on the crash. [13]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind configure using --with-debugging=yes, recompile, link, and run --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Signal received [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [13]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [13]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [23]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: [10]PETSC ERROR: [33]PETSC ERROR: [13]PETSC ERROR: #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors to get more information on the crash. Signal received [10]PETSC ERROR: [33]PETSC ERROR: [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run --------------------- Error Message -------------------------------------------------------------- See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: [33]PETSC ERROR: [24]PETSC ERROR: to get more information on the crash. Signal received --------------------- Error Message -------------------------------------------------------------- Petsc Release Version 3.10.2, Jul, 01, 2019 [37]PETSC ERROR: [10]PETSC ERROR: [33]PETSC ERROR: [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith ------------------------------------------------------------------------ [10]PETSC ERROR: [33]PETSC ERROR: ------------------------------------------------------------------------ [37]PETSC ERROR: Signal received Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: #1 User provided function() line 0 in unknown file Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [10]PETSC ERROR: [33]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Try option -start_in_debugger or -on_error_attach_debugger [10]PETSC ERROR: [33]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: [33]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: [8]PETSC ERROR: #1 User provided function() line 0 in unknown file or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [10]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [10]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: [37]PETSC ERROR: ------------------------------------------------------------------------ or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors configure using --with-debugging=yes, recompile, link, and run [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range configure using --with-debugging=yes, recompile, link, and run to get more information on the crash. [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger to get more information on the crash. --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind --------------------- Error Message -------------------------------------------------------------- Signal received [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Signal received See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. Petsc Release Version 3.10.2, Jul, 01, 2019 [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: to get more information on the crash. Petsc Release Version 3.10.2, Jul, 01, 2019 /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [8]PETSC ERROR: [26]PETSC ERROR: [37]PETSC ERROR: Signal received Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith #1 User provided function() line 0 in unknown file Signal received [8]PETSC ERROR: [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #1 User provided function() line 0 in unknown file [8]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [8]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub335 by meguid Tue Dec 24 01:39:42 2019 [8]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [8]PETSC ERROR: #1 User provided function() line 0 in unknown file [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [1]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [1]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [1]PETSC ERROR: #1 User provided function() line 0 in unknown file [39]PETSC ERROR: ------------------------------------------------------------------------ [39]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [39]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [39]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [39]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [39]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [39]PETSC ERROR: to get more information on the crash. [39]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [39]PETSC ERROR: Signal received [39]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [39]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [39]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [39]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [39]PETSC ERROR: #1 User provided function() line 0 in unknown file [31]PETSC ERROR: ------------------------------------------------------------------------ [31]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [31]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [31]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [31]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [31]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [31]PETSC ERROR: to get more information on the crash. [31]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [31]PETSC ERROR: Signal received [31]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [31]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [31]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 [31]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [31]PETSC ERROR: #1 User provided function() line 0 in unknown file [34]PETSC ERROR: ------------------------------------------------------------------------ [34]PETSC ERROR: [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ [34]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [34]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [34]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [34]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [34]PETSC ERROR: to get more information on the crash. [34]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: Signal received [34]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [34]PETSC ERROR: [28]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [34]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [34]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [34]PETSC ERROR: #1 User provided function() line 0 in unknown file [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range ------------------------------------------------------------------------ [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [28]PETSC ERROR: [33]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [28]PETSC ERROR: [33]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger configure using --with-debugging=yes, recompile, link, and run [33]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: [33]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: [28]PETSC ERROR: Signal received [33]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: [28]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [33]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub312 by meguid Tue Dec 24 01:39:42 2019 [33]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [33]PETSC ERROR: [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: to get more information on the crash. [28]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: [24]PETSC ERROR: [21]PETSC ERROR: ------------------------------------------------------------------------ [21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [21]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [21]PETSC ERROR: to get more information on the crash. to get more information on the crash. [21]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [21]PETSC ERROR: Signal received [21]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [21]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [21]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub343 by meguid Tue Dec 24 01:39:42 2019 [21]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [21]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Signal received [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: [28]PETSC ERROR: [24]PETSC ERROR: Signal received Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [24]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [28]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: [24]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub314 by meguid Tue Dec 24 01:39:42 2019 configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: [24]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [28]PETSC ERROR: [17]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith ------------------------------------------------------------------------ [24]PETSC ERROR: #1 User provided function() line 0 in unknown file [28]PETSC ERROR: [17]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: #1 User provided function() line 0 in unknown file Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [17]PETSC ERROR: Signal received [13]PETSC ERROR: [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger Try option -start_in_debugger or -on_error_attach_debugger [17]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [17]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [17]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [17]PETSC ERROR: to get more information on the crash. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: [17]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [17]PETSC ERROR: [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Petsc Release Version 3.10.2, Jul, 01, 2019 [13]PETSC ERROR: Signal received [17]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [17]PETSC ERROR: [24]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors Petsc Release Version 3.10.2, Jul, 01, 2019 [17]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub345 by meguid Tue Dec 24 01:39:42 2019 [17]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [13]PETSC ERROR: [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [13]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [24]PETSC ERROR: to get more information on the crash. [17]PETSC ERROR: #1 User provided function() line 0 in unknown file #1 User provided function() line 0 in unknown file [13]PETSC ERROR: [26]PETSC ERROR: ------------------------------------------------------------------------ [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [26]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [26]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [26]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [26]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [26]PETSC ERROR: to get more information on the crash. [13]PETSC ERROR: [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Signal received Signal received [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [26]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [26]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub341 by meguid Tue Dec 24 01:39:42 2019 [13]PETSC ERROR: [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [26]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [4]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub339 by meguid Tue Dec 24 01:39:42 2019 [4]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [26]PETSC ERROR: #1 User provided function() line 0 in unknown file [13]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [13]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub344 by meguid Tue Dec 24 01:39:42 2019 [13]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [36]PETSC ERROR: ------------------------------------------------------------------------ [36]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [36]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [36]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [36]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [36]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [36]PETSC ERROR: to get more information on the crash. [36]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [36]PETSC ERROR: Signal received [36]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [36]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [36]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub309 by meguid Tue Dec 24 01:39:42 2019 [36]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [36]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, Jul, 01, 2019 [0]PETSC ERROR: /home/meguid/scratch/pylith/2.2.2/bin/mpinemesis on a named golub329 by meguid Tue Dec 24 01:39:35 2019 [0]PETSC ERROR: Configure options --prefix=/home/meguid/scratch/pylith/2.2.2 --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with-hdf5-dir=/home/meguid/scratch/pylith/2.2.2 --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/meguid/scratch/pylith/2.2.2/include -I/home/meguid/scratch/pylith/2.2.2/include " LDFLAGS="-L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 -L/home/meguid/scratch/pylith/2.2.2/lib -L/home/meguid/scratch/pylith/2.2.2/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/meguid/scratch/pylith/2.2.2/src/pylith-installer-2.2.2-0/petsc-pylith PETSC_ARCH=arch-pylith [0]PETSC ERROR: #1 User provided function() line 0 in unknown file