campus-112-227:Rheology absrp$ pylith elastic_spontaneous.cfg --petsc.ksp_atol=1e-9 >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/utils/PetscManager.py:64:initialize -- petsc(info) -- Initialized PETSc. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main -- pylithapp(info) -- Running on 1 process(es). >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/meshio/MeshIOObj.py:55:read -- meshiocubit(info) -- Reading finite-element mesh >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:158:void pylith::meshio::MeshIOCubit::_readVertices(pylith::meshio::ExodusII &, scalar_array *, int *, int *) const -- meshiocubit(info) -- Reading 15863 vertices. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:217:void pylith::meshio::MeshIOCubit::_readCells(pylith::meshio::ExodusII &, int_array *, int_array *, int *, int *) const -- meshiocubit(info) -- Reading 78621 cells in 1 blocks. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:281:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Found 7 node sets. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_xpos' with id 1 containing 444 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_xneg' with id 2 containing 445 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_ypos' with id 3 containing 469 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_yneg' with id 4 containing 951 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_zpos' with id 5 containing 2098 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'face_zneg' with id 6 containing 1332 nodes. >> ../../../pylith-2.2.1/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII &) -- meshiocubit(info) -- Reading node set 'fault' with id 7 containing 591 nodes. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:93:preinitialize -- timedependent(info) -- Pre-initializing problem. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:360:_setupMaterials -- implicit(info) -- Pre-initializing materials. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials -- implicit(info) -- Added elasticity integrator for material 'Upper crust material'. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:389:_setupBC -- implicit(info) -- Pre-initializing boundary conditions. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'face_xpos' as a constraint. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'face_xneg' as a constraint. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'face_zneg' as a constraint. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:425:_setupInterfaces -- implicit(info) -- Pre-initializing interior interfaces. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:434:_setupInterfaces -- implicit(info) -- Added interface condition 'fault' as an integrator. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:162:preinitialize -- implicit(info) -- Pre-initializing output. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration -- timedependent(info) -- Verifying compatibility of problem configuration. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:118:initialize -- timedependent(info) -- Initializing problem. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:466:_initialize -- implicit(info) -- Initializing integrators. WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize -- implicit(info) -- Initializing constraints. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize -- implicit(info) -- Setting up solution output. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:490:_initialize -- implicit(info) -- Creating solution field. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Implicit.py:130:initialize -- implicit(info) -- Creating other fields. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Implicit.py:153:initialize -- implicit(info) -- Creating Jacobian matrix. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Implicit.py:163:initialize -- implicit(info) -- Initializing solver. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:132:run -- timedependent(info) -- Solving problem. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:138:run -- timedependent(info) -- Preparing for prestep with elastic behavior. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Implicit.py:257:prestepElastic -- implicit(info) -- Setting constraints. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:554:_reformJacobian -- implicit(info) -- Integrating Jacobian operator. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:153:run -- timedependent(info) -- Computing prestep with elastic behavior. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Formulation.py:594:_reformResidual -- implicit(info) -- Integrating residual term in operator. >> /Users/absrp/desktop/pylith-2.2.1-darwin-10.11.6/lib/python2.7/site-packages/pylith/problems/Implicit.py:207:step -- implicit(info) -- Solving equations. Linear friction_ solve converged due to CONVERGED_ATOL iterations 0 Linear friction_ solve converged due to CONVERGED_ATOL iterations 0 0 SNES Function norm 2.644643749475e-02 0 KSP Residual norm 9.626108988480e-03 1 KSP Residual norm 3.679471193161e-03 2 KSP Residual norm 2.103225259522e-03 3 KSP Residual norm 1.466581271365e-03 4 KSP Residual norm 1.049216515157e-03 5 KSP Residual norm 8.196449639761e-04 6 KSP Residual norm 6.669851947363e-04 7 KSP Residual norm 5.484563602383e-04 8 KSP Residual norm 4.662571796207e-04 9 KSP Residual norm 4.063167010879e-04 10 KSP Residual norm 3.570862143956e-04 11 KSP Residual norm 3.178697886633e-04 12 KSP Residual norm 2.833161198550e-04 13 KSP Residual norm 2.592342916490e-04 14 KSP Residual norm 2.393997627334e-04 15 KSP Residual norm 2.248525692563e-04 16 KSP Residual norm 2.127373700778e-04 17 KSP Residual norm 2.026595742299e-04 18 KSP Residual norm 1.917865704796e-04 19 KSP Residual norm 1.814894573527e-04 20 KSP Residual norm 1.714466310461e-04 21 KSP Residual norm 1.638556251759e-04 22 KSP Residual norm 1.568197690388e-04 23 KSP Residual norm 1.508988582486e-04 24 KSP Residual norm 1.462445758429e-04 25 KSP Residual norm 1.412351104348e-04 26 KSP Residual norm 1.342834340980e-04 27 KSP Residual norm 1.254857541479e-04 28 KSP Residual norm 1.177313896030e-04 29 KSP Residual norm 1.101431472351e-04 30 KSP Residual norm 1.047208546609e-04 31 KSP Residual norm 9.757152883732e-05 32 KSP Residual norm 9.181967503050e-05 33 KSP Residual norm 8.511863871354e-05 34 KSP Residual norm 8.013127614992e-05 35 KSP Residual norm 7.581929720269e-05 36 KSP Residual norm 7.214008134745e-05 37 KSP Residual norm 6.762244903312e-05 38 KSP Residual norm 6.213880210725e-05 39 KSP Residual norm 5.780714047392e-05 40 KSP Residual norm 5.292216819259e-05 41 KSP Residual norm 4.941602780072e-05 42 KSP Residual norm 4.511889354340e-05 43 KSP Residual norm 4.116347934983e-05 44 KSP Residual norm 3.701978833543e-05 45 KSP Residual norm 3.374961577246e-05 46 KSP Residual norm 3.022224297294e-05 47 KSP Residual norm 2.674254784977e-05 48 KSP Residual norm 2.374330772212e-05 49 KSP Residual norm 2.084798969064e-05 50 KSP Residual norm 1.832622838310e-05 51 KSP Residual norm 1.689165400845e-05 52 KSP Residual norm 1.586160320725e-05 53 KSP Residual norm 1.481295009772e-05 54 KSP Residual norm 1.318522356747e-05 55 KSP Residual norm 1.190587816070e-05 56 KSP Residual norm 1.065414536858e-05 57 KSP Residual norm 9.499003024468e-06 58 KSP Residual norm 8.623743262746e-06 59 KSP Residual norm 7.667817078871e-06 60 KSP Residual norm 7.030198414059e-06 61 KSP Residual norm 6.293103336188e-06 62 KSP Residual norm 5.739808439608e-06 63 KSP Residual norm 5.170235165024e-06 64 KSP Residual norm 4.806893735951e-06 65 KSP Residual norm 4.457268039439e-06 66 KSP Residual norm 4.206431595354e-06 67 KSP Residual norm 3.947514478779e-06 68 KSP Residual norm 3.685781569690e-06 69 KSP Residual norm 3.501656254862e-06 70 KSP Residual norm 3.337681198605e-06 71 KSP Residual norm 3.210812066104e-06 72 KSP Residual norm 3.059852933263e-06 73 KSP Residual norm 2.935570089754e-06 74 KSP Residual norm 2.784315796119e-06 75 KSP Residual norm 2.649548955424e-06 76 KSP Residual norm 2.503289379401e-06 77 KSP Residual norm 2.364238947400e-06 78 KSP Residual norm 2.234284552988e-06 79 KSP Residual norm 2.145378626235e-06 80 KSP Residual norm 2.042274236587e-06 81 KSP Residual norm 1.960703235143e-06 82 KSP Residual norm 1.880503393463e-06 83 KSP Residual norm 1.810547944152e-06 84 KSP Residual norm 1.729424079293e-06 85 KSP Residual norm 1.642964316717e-06 86 KSP Residual norm 1.549703744127e-06 87 KSP Residual norm 1.452846724700e-06 88 KSP Residual norm 1.344404190574e-06 89 KSP Residual norm 1.211473824526e-06 90 KSP Residual norm 1.057669606960e-06 91 KSP Residual norm 9.511304016148e-07 92 KSP Residual norm 8.452689556183e-07 93 KSP Residual norm 7.499607212303e-07 94 KSP Residual norm 6.672873236078e-07 95 KSP Residual norm 5.887427112947e-07 96 KSP Residual norm 5.239476419835e-07 97 KSP Residual norm 4.665059105300e-07 98 KSP Residual norm 4.155985042089e-07 99 KSP Residual norm 3.667098754463e-07 100 KSP Residual norm 3.234814300645e-07 101 KSP Residual norm 2.966057895097e-07 102 KSP Residual norm 2.750726644911e-07 103 KSP Residual norm 2.572016689677e-07 104 KSP Residual norm 2.270433579239e-07 105 KSP Residual norm 2.107410045691e-07 106 KSP Residual norm 1.870029116076e-07 107 KSP Residual norm 1.716014632538e-07 108 KSP Residual norm 1.550962039022e-07 109 KSP Residual norm 1.396233044587e-07 110 KSP Residual norm 1.246555816777e-07 111 KSP Residual norm 1.134835446222e-07 112 KSP Residual norm 1.007400587420e-07 113 KSP Residual norm 9.069758648674e-08 114 KSP Residual norm 8.336345450602e-08 115 KSP Residual norm 7.635518814610e-08 116 KSP Residual norm 7.084058396574e-08 117 KSP Residual norm 6.459119671810e-08 118 KSP Residual norm 5.883751360799e-08 119 KSP Residual norm 5.140846146876e-08 120 KSP Residual norm 4.626950011654e-08 121 KSP Residual norm 4.049047022094e-08 122 KSP Residual norm 3.579232187380e-08 123 KSP Residual norm 3.161003236546e-08 124 KSP Residual norm 2.805655776007e-08 125 KSP Residual norm 2.464142765410e-08 126 KSP Residual norm 2.206988084492e-08 127 KSP Residual norm 1.991484106907e-08 128 KSP Residual norm 1.788747197368e-08 129 KSP Residual norm 1.651820312368e-08 130 KSP Residual norm 1.514875636850e-08 131 KSP Residual norm 1.421588948848e-08 132 KSP Residual norm 1.352669348025e-08 133 KSP Residual norm 1.289429662986e-08 134 KSP Residual norm 1.238956698645e-08 135 KSP Residual norm 1.200096795612e-08 136 KSP Residual norm 1.167436393210e-08 137 KSP Residual norm 1.144573035671e-08 138 KSP Residual norm 1.121666510073e-08 139 KSP Residual norm 1.102615709899e-08 140 KSP Residual norm 1.076549261971e-08 141 KSP Residual norm 1.047478000766e-08 142 KSP Residual norm 1.015343399122e-08 143 KSP Residual norm 9.847659343840e-09 144 KSP Residual norm 9.421443432958e-09 145 KSP Residual norm 8.919478055181e-09 146 KSP Residual norm 8.436311939412e-09 147 KSP Residual norm 7.942302998528e-09 148 KSP Residual norm 7.384387312048e-09 149 KSP Residual norm 6.969789735005e-09 150 KSP Residual norm 6.442342062214e-09 151 KSP Residual norm 6.119788674153e-09 152 KSP Residual norm 5.771010338124e-09 153 KSP Residual norm 5.488015883891e-09 154 KSP Residual norm 4.818186012245e-09 155 KSP Residual norm 4.592461496053e-09 156 KSP Residual norm 4.392056442662e-09 157 KSP Residual norm 4.250702110362e-09 158 KSP Residual norm 4.134291462783e-09 159 KSP Residual norm 3.990104210437e-09 160 KSP Residual norm 3.835883789636e-09 161 KSP Residual norm 3.677945857663e-09 162 KSP Residual norm 3.522190509552e-09 163 KSP Residual norm 3.372880580854e-09 164 KSP Residual norm 3.229112423366e-09 165 KSP Residual norm 3.037648069205e-09 166 KSP Residual norm 2.859951695223e-09 167 KSP Residual norm 2.683724128705e-09 168 KSP Residual norm 2.536969593237e-09 169 KSP Residual norm 2.421907410299e-09 170 KSP Residual norm 2.274832523275e-09 171 KSP Residual norm 2.137168547013e-09 172 KSP Residual norm 1.930065195974e-09 173 KSP Residual norm 1.783031255819e-09 174 KSP Residual norm 1.612407496735e-09 175 KSP Residual norm 1.501774674027e-09 176 KSP Residual norm 1.405096669247e-09 177 KSP Residual norm 1.331372089039e-09 178 KSP Residual norm 1.223253583632e-09 179 KSP Residual norm 1.112758775488e-09 180 KSP Residual norm 1.009925990087e-09 181 KSP Residual norm 9.348508282675e-10 Linear solve converged due to CONVERGED_ATOL iterations 181 Linear friction_ solve converged due to CONVERGED_ATOL iterations 14 Linear friction_ solve converged due to CONVERGED_ATOL iterations 24 libc++abi.dylib: terminating with uncaught exception of type std::runtime_error: WARNING! Fault opening with nonzero traction., v_fault: 2496, opening: 2.04881e-07, normal traction: 4.65739e-08 [0]0:Return code = 0, signaled with Abort trap: 6 campus-112-227:Rheology absrp$