renato@AsusZenBook:~$ cd pylith/ renato@AsusZenBook:~/pylith$ source setup.sh Ready to run PyLith. renato@AsusZenBook:~/pylith$ cd src/pylith-2.2.2/examples/3d/subduction/ renato@AsusZenBook:~/pylith/src/pylith-2.2.2/examples/3d/subduction$ pylith step01.cfg mat_elastic.cfg >> /home/renato/pylith/lib/python2.7/site-packages/pylith/utils/PetscManager.py:64:initialize -- petsc(info) -- Initialized PETSc. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main -- pylithapp(info) -- Running on 1 process(es). >> /home/renato/pylith/lib/python2.7/site-packages/pylith/meshio/MeshIOObj.py:55:read -- meshiocubit(info) -- Reading finite-element mesh >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:158:void pylith::meshio::MeshIOCubit::_readVertices(pylith::meshio::ExodusII&, pylith::scalar_array*, int*, int*) const -- meshiocubit(info) -- Reading 28016 vertices. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:217:void pylith::meshio::MeshIOCubit::_readCells(pylith::meshio::ExodusII&, pylith::int_array*, pylith::int_array*, int*, int*) const -- meshiocubit(info) -- Reading 154370 cells in 4 blocks. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:281:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Found 22 node sets. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabtop' with id 10 containing 657 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabtop_edge' with id 11 containing 33 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabbot' with id 20 containing 926 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabbot_edge' with id 21 containing 33 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_splay' with id 30 containing 69 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_splay_edge' with id 31 containing 34 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabtop_patch' with id 40 containing 92 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_slabtop_patch_edge' with id 41 containing 26 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_splay_patch' with id 50 containing 18 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'fault_splay_patch_edge' with id 51 containing 11 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_xpos' with id 80 containing 621 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_xneg' with id 81 containing 618 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_xneg_nofault' with id 82 containing 585 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_xneg_noslab' with id 83 containing 520 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_ypos' with id 84 containing 622 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_ypos_nofault' with id 85 containing 579 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_ypos_noslab' with id 86 containing 545 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_yneg' with id 87 containing 632 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_yneg_nofault' with id 88 containing 588 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_yneg_noslab' with id 89 containing 562 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_zneg' with id 90 containing 1231 nodes. >> ../../../pylith-2.2.2/libsrc/pylith/meshio/MeshIOCubit.cc:309:void pylith::meshio::MeshIOCubit::_readGroups(pylith::meshio::ExodusII&) -- meshiocubit(info) -- Reading node set 'boundary_zpos' with id 91 containing 1241 nodes. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:93:preinitialize -- timedependent(info) -- Pre-initializing problem. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:360:_setupMaterials -- implicit(info) -- Pre-initializing materials. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials -- implicit(info) -- Added elasticity integrator for material 'Subducting slab'. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials -- implicit(info) -- Added elasticity integrator for material 'Accretionary wedge'. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials -- implicit(info) -- Added elasticity integrator for material 'Continental crust'. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials -- implicit(info) -- Added elasticity integrator for material 'Mantle'. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:389:_setupBC -- implicit(info) -- Pre-initializing boundary conditions. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'boundary_xneg' as a constraint. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'boundary_xpos' as a constraint. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'boundary_yneg' as a constraint. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'boundary_ypos' as a constraint. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:405:_setupBC -- implicit(info) -- Added boundary condition 'boundary_zneg' as a constraint. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:425:_setupInterfaces -- implicit(info) -- Pre-initializing interior interfaces. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:162:preinitialize -- implicit(info) -- Pre-initializing output. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration -- timedependent(info) -- Verifying compatibility of problem configuration. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:118:initialize -- timedependent(info) -- Initializing problem. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:466:_initialize -- implicit(info) -- Initializing integrators. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize -- implicit(info) -- Initializing constraints. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize -- implicit(info) -- Setting up solution output. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:490:_initialize -- implicit(info) -- Creating solution field. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:130:initialize -- implicit(info) -- Creating other fields. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:153:initialize -- implicit(info) -- Creating Jacobian matrix. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:163:initialize -- implicit(info) -- Initializing solver. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:132:run -- timedependent(info) -- Solving problem. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:138:run -- timedependent(info) -- Preparing for prestep with elastic behavior. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:257:prestepElastic -- implicit(info) -- Setting constraints. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:554:_reformJacobian -- implicit(info) -- Integrating Jacobian operator. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:153:run -- timedependent(info) -- Computing prestep with elastic behavior. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:594:_reformResidual -- implicit(info) -- Integrating residual term in operator. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:207:step -- implicit(info) -- Solving equations. 0 KSP Residual norm 1.999724200090e-01 1 KSP Residual norm 5.467896198704e-15 Linear solve converged due to CONVERGED_ATOL iterations 1 >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:159:run -- timedependent(info) -- Finishing prestep with elastic behavior. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Implicit.py:242:poststep -- implicit(info) -- Writing solution fields. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:273:finalize -- implicit(info) -- Formulation finalize. >> /home/renato/pylith/lib/python2.7/site-packages/pylith/utils/PetscManager.py:75:finalize -- petsc(info) -- Finalizing PETSc. ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /home/renato/pylith/bin/mpinemesis on a named AsusZenBook with 1 processor, by renato Wed May 12 22:44:38 2021 Using Petsc Release Version 3.10.2, Jul, 01, 2019 Max Max/Min Avg Total Time (sec): 1.779e+02 1.000 1.779e+02 Objects: 1.172e+03 1.000 1.172e+03 Flop: 4.108e+11 1.000 4.108e+11 4.108e+11 Flop/sec: 2.310e+09 1.000 2.310e+09 2.310e+09 Memory: 2.562e+09 1.000 2.562e+09 2.562e+09 MPI Messages: 0.000e+00 0.000 0.000e+00 0.000e+00 MPI Message Lengths: 0.000e+00 0.000 0.000e+00 0.000e+00 MPI Reductions: 0.000e+00 0.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 9.5195e-01 0.5% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 1: Meshing: 1.4278e+00 0.8% 8.4048e+04 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 2: Setup: 5.1574e+00 2.9% 3.8325e+07 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 3: Reform Jacobian: 3.0236e+00 1.7% 4.3795e+08 0.1% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 4: Reform Residual: 5.6320e-01 0.3% 4.1455e+07 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 5: Solve: 1.6599e+02 93.3% 4.1019e+11 99.9% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 6: Prestep: 5.3373e-02 0.0% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 7: Step: 2.4777e-02 0.0% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 8: Poststep: 4.0168e-01 0.2% 6.5775e+07 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 9: Finalize: 2.6193e-01 0.1% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage --- Event Stage 1: Meshing MeIm create 1 1.0 1.4150e+00 1.0 8.40e+04 1.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 99100 0 0 0 0 MeIm adjTopo 1 1.0 2.5034e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MeIm reorder 1 1.0 2.5147e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 18 0 0 0 0 0 DMPlexInterp 1 1.0 7.0514e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 49 0 0 0 0 0 DMPlexStratify 3 1.0 2.8482e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 20 0 0 0 0 0 VecScale 1 1.0 2.3389e-04 1.0 8.40e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0100 0 0 0 359 VecSet 2 1.0 5.8174e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 Refin refine 1 1.0 2.1458e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 2: Setup BuildTwoSidedF 4 1.0 5.6028e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 DMPlexStratify 1 1.0 1.5678e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 DMPlexPrealloc 1 1.0 2.9717e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 58 0 0 0 0 0 SFSetGraph 15 1.0 1.1165e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyBegin 1 1.0 0.0000e+00 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 1 1.0 3.4590e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 1.1191e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecView 14 1.0 6.7026e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 VecMDot 3 1.0 4.1890e-04 1.0 1.93e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 5 0 0 0 4602 VecNorm 6 1.0 6.0368e-04 1.0 9.64e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 3 0 0 0 1597 VecScale 16 1.0 1.9917e-03 1.0 1.24e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 3 0 0 0 624 VecCopy 10 1.0 5.5885e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 127 1.0 1.1245e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecMAXPY 3 1.0 3.8815e-04 1.0 1.93e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 5 0 0 0 4967 VecAssemblyBegin 4 1.0 7.5102e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAssemblyEnd 4 1.0 8.8215e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 6 1.0 1.4098e-03 1.0 1.45e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 4 0 0 0 1026 TSIm preinit 1 1.0 1.2980e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 3 0 0 0 0 0 TSIm verify 1 1.0 9.0206e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 2 0 0 0 0 0 DtUn preinit 1 1.0 2.8610e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 DtUn verify 1 1.0 4.0531e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 DtUn init 1 1.0 3.6955e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ElIm verify 4 1.0 8.9724e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 2 0 0 0 0 0 ElIm init 4 1.0 1.2812e+00 1.0 3.29e+07 1.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 25 86 0 0 0 26 MaEl3D verify 4 1.0 9.3937e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 OutM init 6 1.0 2.5217e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 OutM open 10 1.0 8.1827e-01 1.0 7.60e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 16 2 0 0 0 1 OutM writeInfo 6 1.0 4.3634e-01 1.0 3.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 8 8 0 0 0 7 DiBC verify 5 1.0 8.0824e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 DiBC init 5 1.0 1.1053e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 3: Reform Jacobian MatAssemblyBegin 1 1.0 9.5367e-07 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 1 1.0 3.3739e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 7.8220e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ElIJ setup 4 1.0 2.1546e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 71 0 0 0 0 0 ElIJ compute 4 1.0 8.5657e-01 1.0 4.38e+08 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 28100 0 0 0 511 --- Event Stage 4: Reform Residual BuildTwoSided 1 1.0 1.0014e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 1 1.0 8.7976e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 1 1.0 1.3351e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFBcastBegin 1 1.0 1.4496e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFBcastEnd 1 1.0 1.2493e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 3.5095e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceEnd 1 1.0 1.2589e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 2 1.0 3.4070e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ElIR setup 4 1.0 4.3092e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 77 0 0 0 0 0 ElIR compute 4 1.0 1.0729e-01 1.0 4.14e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 19100 0 0 0 386 --- Event Stage 5: Solve BuildTwoSided 1 1.0 1.0967e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 1 1.0 1.2329e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFBcastBegin 1 1.0 1.6999e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFBcastEnd 1 1.0 2.3293e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMult 1 1.0 2.9171e-03 1.0 6.73e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2308 MatSolve 2 1.0 3.4854e-01 1.0 6.86e+08 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1967 MatLUFactorSym 1 1.0 3.4209e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 MatLUFactorNum 1 1.0 1.6217e+02 1.0 4.09e+11 1.0 0.0e+00 0.0e+00 0.0e+00 91100 0 0 0 98100 0 0 0 2525 MatGetRowIJ 1 1.0 5.1289e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 3.2281e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecMDot 1 1.0 7.8917e-05 1.0 1.61e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2036 VecNorm 2 1.0 2.1005e-04 1.0 3.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1530 VecScale 2 1.0 5.2500e-04 1.0 1.61e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 306 VecCopy 1 1.0 7.3195e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 7 1.0 1.1694e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 1 1.0 2.4796e-04 1.0 1.61e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 648 VecMAXPY 2 1.0 1.2398e-04 1.0 3.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2592 VecNormalize 2 1.0 7.3624e-04 1.0 4.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 655 SoLi setup 1 1.0 3.0994e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SoLi solve 1 1.0 1.6598e+02 1.0 4.10e+11 1.0 0.0e+00 0.0e+00 0.0e+00 93100 0 0 0 100100 0 0 0 2471 SoLi scatter 2 1.0 1.0561e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.0431e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.6598e+02 1.0 4.10e+11 1.0 0.0e+00 0.0e+00 0.0e+00 93100 0 0 0 100100 0 0 0 2471 KSPGMRESOrthog 1 1.0 1.5712e-04 1.0 3.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2045 PCSetUp 1 1.0 1.6562e+02 1.0 4.09e+11 1.0 0.0e+00 0.0e+00 0.0e+00 93100 0 0 0 100100 0 0 0 2472 PCApply 2 1.0 3.4855e-01 1.0 6.86e+08 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1967 --- Event Stage 6: Prestep VecSet 1 1.0 2.0099e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 TSIm timestep 1 1.0 1.1706e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 7: Step --- Event Stage 8: Poststep BuildTwoSidedF 6 1.0 4.9829e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 6 1.0 1.2150e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecView 6 1.0 2.9385e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 7 0 0 0 0 0 VecSet 27 1.0 8.9767e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 2 0 0 0 0 0 VecAXPY 1 1.0 2.9206e-04 1.0 1.68e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 576 VecAssemblyBegin 6 1.0 8.4877e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAssemblyEnd 6 1.0 1.4305e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 TSIm poststep 1 1.0 7.2002e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 TSIm write 1 1.0 2.5188e-01 1.0 6.56e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 63100 0 0 0 260 ElIm poststep 4 1.0 2.5034e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ElIm write 4 1.0 2.5183e-01 1.0 6.56e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 63100 0 0 0 261 OutM writeData 6 1.0 4.0077e-01 1.0 6.56e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 100100 0 0 0 164 --- Event Stage 9: Finalize TSIm finalize 1 1.0 2.6186e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 100 0 0 0 0 0 OutM close 6 1.0 3.2272e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 12 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Container 0 54 31104 0. Distributed Mesh 0 94 442480 0. GraphPartitioner 0 3 1836 0. Index Set 0 93 68064600 0. IS L to G Mapping 0 1 336864 0. Section 0 133 94696 0. Star Forest Graph 0 97 77728 0. Discrete System 0 94 87232 0. Matrix 0 5 2099791604 0. Matrix Null Space 0 1 696 0. Vector 0 81 66583184 0. Viewer 1 1 840 0. Krylov Solver 0 1 45904 0. Preconditioner 0 1 1000 0. --- Event Stage 1: Meshing Container 1 0 0 0. Distributed Mesh 10 6 30024 0. GraphPartitioner 5 3 1836 0. Index Set 120 60 8222436 0. Section 26 14 9968 0. Star Forest Graph 20 14 11200 0. Discrete System 10 6 5568 0. Matrix 3 1 2808 0. Vector 2 1 673920 0. --- Event Stage 2: Setup Container 66 22 12672 0. Distributed Mesh 96 21 98616 0. GraphPartitioner 1 0 0 0. Index Set 44 21 710408 0. IS L to G Mapping 1 0 0 0. Section 140 41 29192 0. Star Forest Graph 194 118 94400 0. Discrete System 96 21 19488 0. Matrix 2 0 0 0. Matrix Null Space 1 0 0 0. Vector 113 44 33187784 0. Viewer 11 4 3168 0. Krylov Solver 1 0 0 0. Preconditioner 1 0 0 0. --- Event Stage 3: Reform Jacobian Index Set 6 0 0 0. Section 14 8 5696 0. --- Event Stage 4: Reform Residual Index Set 1 0 0 0. Section 1 0 0 0. --- Event Stage 5: Solve Index Set 5 2 225680 0. Matrix 1 0 0 0. Vector 5 0 0 0. --- Event Stage 6: Prestep --- Event Stage 7: Step --- Event Stage 8: Poststep Container 14 5 2880 0. Distributed Mesh 25 10 46960 0. Index Set 1 1 38940 0. Section 33 18 12816 0. Star Forest Graph 50 35 28000 0. Discrete System 25 10 9280 0. Vector 26 14 5041360 0. --- Event Stage 9: Finalize Vector 0 6 9984 0. Viewer 0 6 4752 0. ======================================================================================================================== Average time to get PetscTime(): 1.19209e-07 #PETSc Option Table entries: -ksp_atol 1.0e-11 -ksp_converged_reason -ksp_error_if_not_converged -ksp_gmres_restart 50 -ksp_max_it 500 -ksp_monitor -ksp_rtol 1.0e-10 -log_view -malloc_dump -pc_type lu -snes_atol 1.0e-9 -snes_converged_reason -snes_error_if_not_converged -snes_linesearch_monitor -snes_max_it 100 -snes_monitor -snes_rtol 1.0e-10 #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --prefix=/home/brad/pylith-binary/dist --with-c2html=0 --with-x=0 --with-clanguage=C --with-mpicompilers=1 --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hwloc=0 --with-ssl=0 --with-x=0 --with-c2html=0 --with-lgrind=0 --with-hdf5=1 --with-hdf5-dir=/home/brad/pylith-binary/dist --with-zlib=1 --LIBS=-lz --with-debugging=0 --with-fc=0 CPPFLAGS="-I/home/brad/pylith-binary/dist/include -I/home/brad/pylith-binary/dist/include " LDFLAGS="-L/home/brad/pylith-binary/dist/lib -L/home/brad/pylith-binary/dist/lib64 -L/home/brad/pylith-binary/dist/lib -L/home/brad/pylith-binary/dist/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS= PETSC_DIR=/home/brad/pylith-binary/build/petsc-pylith PETSC_ARCH=arch-pylith ----------------------------------------- Libraries compiled on 2019-07-02 18:55:01 on brad-centos-6.9-amd64 Machine characteristics: Linux-2.6.32-754.15.3.el6.x86_64-x86_64-with-centos-6.10-Final Using PETSc directory: /home/brad/pylith-binary/dist Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -I/home/brad/pylith-binary/dist/include -I/home/brad/pylith-binary/dist/include ----------------------------------------- Using include paths: -I/home/brad/pylith-binary/dist/include ----------------------------------------- Using C linker: mpicc Using libraries: -Wl,-rpath,/home/brad/pylith-binary/dist/lib -L/home/brad/pylith-binary/dist/lib -lpetsc -Wl,-rpath,/home/brad/pylith-binary/dist/lib -L/home/brad/pylith-binary/dist/lib -lml -lf2clapack -lf2cblas -lhdf5_hl -lhdf5 -lchaco -lstdc++ -ldl -lz ----------------------------------------- renato@AsusZenBook:~/pylith/src/pylith-2.2.2/examples/3d/subduction$