This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by python configure 2.7, which was generated by GNU Autoconf 2.69. Invocation command line was $ ../Python-2.7.15/configure --prefix=/Users/gcheng6/pylith --enable-shared CPPFLAGS=-I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include LDFLAGS=-L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib CFLAGS=-g -O2 CXXFLAGS=-g -O2 -DMPICH_IGNORE_CXX_SEEK FCFLAGS= CC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc CXX=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx ## --------- ## ## Platform. ## ## --------- ## hostname = argon-login-1.hpc uname -m = x86_64 uname -r = 3.10.0-1127.19.1.el7.x86_64 uname -s = Linux uname -v = #1 SMP Tue Aug 25 17:23:54 UTC 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Users/gcheng6/pylith/bin PATH: /Users/gcheng6/pylith/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf-4.2.15/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/bin PATH: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/libiconv-1.16/bin PATH: /Users/gcheng6/pylith/bin PATH: /opt/sge/bin PATH: /opt/sge/bin/lx-amd64 PATH: /Users/gcheng6/Software/miniconda3/bin PATH: /Users/gcheng6/Software/miniconda3/condabin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /opt/puppetlabs/bin PATH: /Users/gcheng6/tools/MintPy/mintpy PATH: /usr/local/sbin PATH: /usr/sbin PATH: /Users/gcheng6/.local/bin PATH: /Users/gcheng6/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2833: checking build system type configure:2847: result: x86_64-pc-linux-gnu configure:2867: checking host system type configure:2880: result: x86_64-pc-linux-gnu configure:2910: checking for python2.7 configure:2926: found /usr/bin/python2.7 configure:2937: result: python2.7 configure:3036: checking for --enable-universalsdk configure:3083: result: no configure:3106: checking for --with-universal-archs configure:3121: result: no configure:3274: checking MACHDEP configure:3466: result: linux2 configure:3475: checking EXTRAPLATDIR configure:3490: result: configure:3511: checking for --without-gcc configure:3555: result: no configure:3558: checking for --with-icc configure:3578: result: no configure:3672: checking for gcc configure:3699: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc configure:3928: checking for C compiler version configure:3937: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc --version >&5 gcc (Spack GCC) 5.4.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3948: $? = 0 configure:3937: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -v >&5 Reading specs from /opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/specs COLLECT_GCC=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/bin/gcc COLLECT_LTO_WRAPPER=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: /dev/shm/gpjohnsn/spack-stage-gcc-5.4.0-btz6b3gjw4d3lopwpyt6lh6eyaj2omhr/spack-src/configure --prefix=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g --with-pkgversion='Spack GCC' --with-bugurl=https://github.com/spack/spack/issues --disable-multilib --enable-languages=c,c++,fortran --disable-nls --with-mpfr-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/include --with-mpfr-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib --with-gmp-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/include --with-gmp-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib --with-mpc-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/include --with-mpc-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib --with-isl-include=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/include --with-isl-lib=/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib --with-stage1-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib' --with-boot-ldflags='-Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gcc-5.4.0-btz6b3g/lib64 -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/gmp-6.1.2-6bsovvk/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/isl-0.15-s7aaz6b/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpc-1.1.0-vc2jxrg/lib -Wl,-rpath,/opt/ssoft/apps/2020.2/linux-centos7-x86_64/gcc-4.8.5/mpfr-3.1.6-ykxb7za/lib -static-libstdc++ -static-libgcc' Thread model: posix gcc version 5.4.0 (Spack GCC) configure:3948: $? = 0 configure:3937: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3948: $? = 1 configure:3937: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3948: $? = 1 configure:3968: checking whether the C compiler works configure:3990: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:3994: $? = 0 configure:4042: result: yes configure:4045: checking for C compiler default output file name configure:4047: result: a.out configure:4053: checking for suffix of executables configure:4060: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:4064: $? = 0 configure:4086: result: configure:4108: checking whether we are cross compiling configure:4116: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:4120: $? = 0 configure:4127: ./conftest configure:4131: $? = 0 configure:4146: result: no configure:4151: checking for suffix of object files configure:4173: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:4177: $? = 0 configure:4198: result: o configure:4202: checking whether we are using the GNU C compiler configure:4221: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:4221: $? = 0 configure:4230: result: yes configure:4239: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -g configure:4259: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:4259: $? = 0 configure:4300: result: yes configure:4317: checking for /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc option to accept ISO C89 configure:4380: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:4380: $? = 0 configure:4393: result: none needed configure:4420: checking for --with-cxx-main= configure:4446: result: no configure:4787: checking how to run the C preprocessor configure:4818: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:4818: $? = 0 configure:4832: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:4832: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | /* end confdefs.h. */ | #include configure:4857: result: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E configure:4877: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:4877: $? = 0 configure:4891: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:4891: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | /* end confdefs.h. */ | #include configure:4920: checking for grep that handles long lines and -e configure:4978: result: /usr/bin/grep configure:4983: checking for egrep configure:5045: result: /usr/bin/grep -E configure:5050: checking for ANSI C header files configure:5070: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5070: $? = 0 configure:5143: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:5143: $? = 0 configure:5143: ./conftest configure:5143: $? = 0 configure:5154: result: yes configure:5167: checking for sys/types.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for sys/stat.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for stdlib.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for string.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for memory.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for strings.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for inttypes.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for stdint.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5167: checking for unistd.h configure:5167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5167: $? = 0 configure:5167: result: yes configure:5180: checking minix/config.h usability configure:5180: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:54:26: fatal error: minix/config.h: No such file or directory compilation terminated. configure:5180: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:5180: result: no configure:5180: checking minix/config.h presence configure:5180: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:21:26: fatal error: minix/config.h: No such file or directory compilation terminated. configure:5180: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:5180: result: no configure:5180: checking for minix/config.h configure:5180: result: no configure:5201: checking whether it is safe to define __EXTENSIONS__ configure:5219: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:5219: $? = 0 configure:5226: result: yes configure:5250: checking for --with-suffix configure:5263: result: configure:5269: checking for case-insensitive build directory configure:5281: result: no configure:5309: checking LIBRARY configure:5315: result: libpython$(VERSION).a configure:5351: checking LINKCC configure:5370: result: $(PURIFY) $(MAINCC) configure:5379: checking for GNU ld configure:5391: result: yes configure:5394: checking for --enable-shared configure:5411: result: yes configure:5414: checking for --enable-profiling configure:5439: result: no configure:5447: checking LDLIBRARY configure:5541: result: libpython$(VERSION).so configure:5587: checking for ranlib configure:5603: found /usr/bin/ranlib configure:5614: result: ranlib configure:5686: checking for ar configure:5702: found /usr/bin/ar configure:5713: result: ar configure:5825: checking for a BSD-compatible install configure:5893: result: /usr/bin/install -c configure:5904: checking for a thread-safe mkdir -p configure:5943: result: /usr/bin/mkdir -p configure:5959: checking for --with-pydebug configure:5977: result: no configure:6054: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -fno-strict-aliasing configure:6072: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -fno-strict-aliasing -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:6072: $? = 0 configure:6081: result: yes configure:6277: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -OPT:Olimit=0 configure:6295: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -OPT:Olimit=0 -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 cc1: error: argument to '-O' should be a non-negative integer, 'g', 's' or 'fast' configure:6295: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6305: result: no configure:6324: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc accepts -Olimit 1500 configure:6342: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -Olimit 1500 -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 gcc: error: 1500: No such file or directory configure:6342: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6352: result: no configure:6369: checking whether gcc supports ParseTuple __format__ configure:6386: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -Werror -Wformat -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:28:5: error: 'PyArg_ParseTuple' is an unrecognized format function type [-Werror=format=] void f(char*,...)__attribute((format(PyArg_ParseTuple, 1, 2))); ^ cc1: all warnings being treated as errors configure:6386: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | /* end confdefs.h. */ | | void f(char*,...)__attribute((format(PyArg_ParseTuple, 1, 2))); | int | main () | { | | ; | return 0; | } | configure:6396: result: no configure:6409: checking for --enable-optimizations configure:6425: result: no configure:6446: checking for --with-lto configure:6463: result: no configure:6512: checking target system type configure:6525: result: x86_64-pc-linux-gnu configure:6553: checking for -llvm-profdata configure:6586: result: no configure:6596: checking for llvm-profdata configure:6627: result: '' configure:6717: checking whether pthreads are available without options configure:6742: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:6742: $? = 0 configure:6742: ./conftest configure:6742: $? = 0 configure:6758: result: yes configure:6919: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx also accepts flags for thread support configure:6950: result: no configure:6957: checking for ANSI C header files configure:7061: result: yes configure:7083: checking asm/types.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking asm/types.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for asm/types.h configure:7083: result: yes configure:7083: checking crypt.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking crypt.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for crypt.h configure:7083: result: yes configure:7083: checking conio.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:63:19: fatal error: conio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking conio.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:30:19: fatal error: conio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for conio.h configure:7083: result: no configure:7083: checking direct.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:63:20: fatal error: direct.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking direct.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:30:20: fatal error: direct.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for direct.h configure:7083: result: no configure:7083: checking dlfcn.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking dlfcn.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for dlfcn.h configure:7083: result: yes configure:7083: checking errno.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking errno.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for errno.h configure:7083: result: yes configure:7083: checking fcntl.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking fcntl.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for fcntl.h configure:7083: result: yes configure:7083: checking grp.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking grp.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for grp.h configure:7083: result: yes configure:7083: checking ieeefp.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:67:20: fatal error: ieeefp.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking ieeefp.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:34:20: fatal error: ieeefp.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for ieeefp.h configure:7083: result: no configure:7083: checking io.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:67:16: fatal error: io.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking io.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:34:16: fatal error: io.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for io.h configure:7083: result: no configure:7083: checking langinfo.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking langinfo.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for langinfo.h configure:7083: result: yes configure:7083: checking libintl.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking libintl.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for libintl.h configure:7083: result: yes configure:7083: checking poll.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking poll.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for poll.h configure:7083: result: yes configure:7083: checking process.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:70:21: fatal error: process.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking process.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:37:21: fatal error: process.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for process.h configure:7083: result: no configure:7083: checking pthread.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking pthread.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for pthread.h configure:7083: result: yes configure:7083: checking shadow.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking shadow.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for shadow.h configure:7083: result: yes configure:7083: checking signal.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking signal.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for signal.h configure:7083: result: yes configure:7083: checking for stdint.h configure:7083: result: yes configure:7083: checking stropts.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:74:21: fatal error: stropts.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking stropts.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:41:21: fatal error: stropts.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for stropts.h configure:7083: result: no configure:7083: checking termios.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking termios.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for termios.h configure:7083: result: yes configure:7083: checking thread.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:75:20: fatal error: thread.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking thread.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:42:20: fatal error: thread.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for thread.h configure:7083: result: no configure:7083: checking for unistd.h configure:7083: result: yes configure:7083: checking utime.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking utime.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for utime.h configure:7083: result: yes configure:7083: checking sys/audioio.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:77:25: fatal error: sys/audioio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/audioio.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:44:25: fatal error: sys/audioio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/audioio.h configure:7083: result: no configure:7083: checking sys/bsdtty.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:77:24: fatal error: sys/bsdtty.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/bsdtty.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:44:24: fatal error: sys/bsdtty.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/bsdtty.h configure:7083: result: no configure:7083: checking sys/epoll.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/epoll.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/epoll.h configure:7083: result: yes configure:7083: checking sys/event.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:78:23: fatal error: sys/event.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/event.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:45:23: fatal error: sys/event.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/event.h configure:7083: result: no configure:7083: checking sys/file.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/file.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/file.h configure:7083: result: yes configure:7083: checking sys/loadavg.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:79:25: fatal error: sys/loadavg.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/loadavg.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:46:25: fatal error: sys/loadavg.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/loadavg.h configure:7083: result: no configure:7083: checking sys/lock.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:79:22: fatal error: sys/lock.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/lock.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:46:22: fatal error: sys/lock.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/lock.h configure:7083: result: no configure:7083: checking sys/mkdev.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:79:23: fatal error: sys/mkdev.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/mkdev.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:46:23: fatal error: sys/mkdev.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/mkdev.h configure:7083: result: no configure:7083: checking sys/modem.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:79:23: fatal error: sys/modem.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/modem.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:46:23: fatal error: sys/modem.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/modem.h configure:7083: result: no configure:7083: checking sys/param.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/param.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/param.h configure:7083: result: yes configure:7083: checking sys/poll.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/poll.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/poll.h configure:7083: result: yes configure:7083: checking sys/random.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:81:24: fatal error: sys/random.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/random.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:48:24: fatal error: sys/random.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/random.h configure:7083: result: no configure:7083: checking sys/select.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/select.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/select.h configure:7083: result: yes configure:7083: checking sys/socket.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/socket.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/socket.h configure:7083: result: yes configure:7083: checking sys/statvfs.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/statvfs.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/statvfs.h configure:7083: result: yes configure:7083: checking for sys/stat.h configure:7083: result: yes configure:7083: checking sys/termio.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:85:24: fatal error: sys/termio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking sys/termio.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:52:24: fatal error: sys/termio.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for sys/termio.h configure:7083: result: no configure:7083: checking sys/time.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/time.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/time.h configure:7083: result: yes configure:7083: checking sys/times.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/times.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/times.h configure:7083: result: yes configure:7083: checking for sys/types.h configure:7083: result: yes configure:7083: checking sys/un.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/un.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/un.h configure:7083: result: yes configure:7083: checking sys/utsname.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/utsname.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/utsname.h configure:7083: result: yes configure:7083: checking sys/wait.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/wait.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/wait.h configure:7083: result: yes configure:7083: checking pty.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking pty.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for pty.h configure:7083: result: yes configure:7083: checking libutil.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:92:21: fatal error: libutil.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking libutil.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:59:21: fatal error: libutil.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for libutil.h configure:7083: result: no configure:7083: checking sys/resource.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/resource.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/resource.h configure:7083: result: yes configure:7083: checking netpacket/packet.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking netpacket/packet.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for netpacket/packet.h configure:7083: result: yes configure:7083: checking sysexits.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sysexits.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sysexits.h configure:7083: result: yes configure:7083: checking bluetooth.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:95:23: fatal error: bluetooth.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking bluetooth.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:62:23: fatal error: bluetooth.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for bluetooth.h configure:7083: result: no configure:7083: checking bluetooth/bluetooth.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:95:33: fatal error: bluetooth/bluetooth.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:7083: result: no configure:7083: checking bluetooth/bluetooth.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:62:33: fatal error: bluetooth/bluetooth.h: No such file or directory compilation terminated. configure:7083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | /* end confdefs.h. */ | #include configure:7083: result: no configure:7083: checking for bluetooth/bluetooth.h configure:7083: result: no configure:7083: checking linux/tipc.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking linux/tipc.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for linux/tipc.h configure:7083: result: yes configure:7083: checking spawn.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking spawn.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for spawn.h configure:7083: result: yes configure:7083: checking util.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking util.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for util.h configure:7083: result: yes configure:7083: checking alloca.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking alloca.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for alloca.h configure:7083: result: yes configure:7083: checking sys/sysmacros.h usability configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking sys/sysmacros.h presence configure:7083: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/sysmacros.h configure:7083: result: yes configure:7096: checking for dirent.h that defines DIR configure:7115: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7115: $? = 0 configure:7123: result: yes configure:7136: checking for library containing opendir configure:7167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7167: $? = 0 configure:7184: result: none required configure:7251: checking whether sys/types.h defines makedev configure:7267: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7267: $? = 0 configure:7276: result: yes configure:7305: checking for linux/netlink.h configure:7305: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7305: $? = 0 configure:7305: result: yes configure:7326: checking for clock_t in time.h configure:7345: result: yes configure:7349: checking for makedev configure:7369: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7369: $? = 0 configure:7405: result: yes configure:7421: checking Solaris LFS bug configure:7438: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7438: $? = 0 configure:7444: result: no configure:7476: checking for mode_t configure:7476: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7476: $? = 0 configure:7476: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:111:21: error: expected expression before ')' token if (sizeof ((mode_t))) ^ configure:7476: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((mode_t))) | return 0; | ; | return 0; | } configure:7476: result: yes configure:7487: checking for off_t configure:7487: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7487: $? = 0 configure:7487: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:111:20: error: expected expression before ')' token if (sizeof ((off_t))) ^ configure:7487: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:7487: result: yes configure:7498: checking for pid_t configure:7498: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7498: $? = 0 configure:7498: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:111:20: error: expected expression before ')' token if (sizeof ((pid_t))) ^ configure:7498: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:7498: result: yes configure:7514: checking for size_t configure:7514: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7514: $? = 0 configure:7514: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:112:21: error: expected expression before ')' token if (sizeof ((size_t))) ^ configure:7514: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:7514: result: yes configure:7525: checking for uid_t in sys/types.h configure:7544: result: yes configure:7563: checking for uint32_t configure:7563: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7563: $? = 0 configure:7563: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:112:23: error: expected expression before ')' token if (sizeof ((uint32_t))) ^ configure:7563: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((uint32_t))) | return 0; | ; | return 0; | } configure:7563: result: yes configure:7570: checking for uint32_t configure:7570: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7570: $? = 0 configure:7570: result: yes configure:7585: checking for uint64_t configure:7585: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7585: $? = 0 configure:7585: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:113:23: error: expected expression before ')' token if (sizeof ((uint64_t))) ^ configure:7585: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((uint64_t))) | return 0; | ; | return 0; | } configure:7585: result: yes configure:7592: checking for uint64_t configure:7592: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7592: $? = 0 configure:7592: result: yes configure:7607: checking for int32_t configure:7607: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7607: $? = 0 configure:7607: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:114:22: error: expected expression before ')' token if (sizeof ((int32_t))) ^ configure:7607: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int32_t))) | return 0; | ; | return 0; | } configure:7607: result: yes configure:7614: checking for int32_t configure:7614: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7614: $? = 0 configure:7614: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:117:53: warning: integer overflow in expression [-Woverflow] < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:116:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:7614: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 32 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) | < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:7614: result: yes configure:7626: checking for int64_t configure:7626: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7626: $? = 0 configure:7626: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:115:22: error: expected expression before ')' token if (sizeof ((int64_t))) ^ configure:7626: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int64_t))) | return 0; | ; | return 0; | } configure:7626: result: yes configure:7633: checking for int64_t configure:7633: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7633: $? = 0 configure:7633: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:118:53: warning: integer overflow in expression [-Woverflow] < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:117:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:7633: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 64 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) | < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:7633: result: yes configure:7645: checking for ssize_t configure:7645: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7645: $? = 0 configure:7645: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:116:22: error: expected expression before ')' token if (sizeof ((ssize_t))) ^ configure:7645: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:7645: result: yes configure:7659: checking size of int configure:7664: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7664: $? = 0 configure:7664: ./conftest configure:7664: $? = 0 configure:7678: result: 4 configure:7692: checking size of long configure:7697: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7697: $? = 0 configure:7697: ./conftest configure:7697: $? = 0 configure:7711: result: 8 configure:7725: checking size of void * configure:7730: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7730: $? = 0 configure:7730: ./conftest configure:7730: $? = 0 configure:7744: result: 8 configure:7758: checking size of short configure:7763: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7763: $? = 0 configure:7763: ./conftest configure:7763: $? = 0 configure:7777: result: 2 configure:7791: checking size of float configure:7796: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7796: $? = 0 configure:7796: ./conftest configure:7796: $? = 0 configure:7810: result: 4 configure:7824: checking size of double configure:7829: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7829: $? = 0 configure:7829: ./conftest configure:7829: $? = 0 configure:7843: result: 8 configure:7857: checking size of fpos_t configure:7862: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7862: $? = 0 configure:7862: ./conftest configure:7862: $? = 0 configure:7876: result: 16 configure:7890: checking size of size_t configure:7895: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7895: $? = 0 configure:7895: ./conftest configure:7895: $? = 0 configure:7909: result: 8 configure:7923: checking size of pid_t configure:7928: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7928: $? = 0 configure:7928: ./conftest configure:7928: $? = 0 configure:7942: result: 4 configure:7953: checking for long long support configure:7967: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:7967: $? = 0 configure:7976: result: yes configure:7983: checking size of long long configure:7988: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:7988: $? = 0 configure:7988: ./conftest configure:7988: $? = 0 configure:8002: result: 8 configure:8014: checking for long double support configure:8028: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:8028: $? = 0 configure:8037: result: yes configure:8044: checking size of long double configure:8049: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8049: $? = 0 configure:8049: ./conftest configure:8049: $? = 0 configure:8063: result: 16 configure:8075: checking for _Bool support configure:8089: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:8089: $? = 0 configure:8098: result: yes configure:8105: checking size of _Bool configure:8110: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8110: $? = 0 configure:8110: ./conftest configure:8110: $? = 0 configure:8124: result: 1 configure:8136: checking for uintptr_t configure:8136: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:8136: $? = 0 configure:8136: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:106:24: error: expected expression before ')' token if (sizeof ((uintptr_t))) ^ configure:8136: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | /* end confdefs.h. */ | #ifdef HAVE_STDINT_H | #include | #endif | #ifdef HAVE_INTTYPES_H | #include | #endif | | int | main () | { | if (sizeof ((uintptr_t))) | return 0; | ; | return 0; | } configure:8136: result: yes configure:8153: checking size of uintptr_t configure:8158: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8158: $? = 0 configure:8158: ./conftest configure:8158: $? = 0 configure:8172: result: 8 configure:8189: checking size of off_t configure:8194: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8194: $? = 0 configure:8194: ./conftest configure:8194: $? = 0 configure:8213: result: 8 configure:8224: checking whether to enable large file support configure:8236: result: no configure:8248: checking size of time_t configure:8253: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8253: $? = 0 configure:8253: ./conftest configure:8253: $? = 0 configure:8275: result: 8 configure:8295: checking for pthread_t configure:8311: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:8311: $? = 0 configure:8315: result: yes configure:8322: checking size of pthread_t configure:8327: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c >&5 configure:8327: $? = 0 configure:8327: ./conftest configure:8327: $? = 0 configure:8346: result: 8 configure:8359: checking for --enable-toolbox-glue configure:8389: result: no configure:8482: checking for --enable-framework configure:8499: result: no configure:8503: checking for dyld configure:8514: result: no configure:8528: checking SO configure:8554: result: .so configure:8566: checking LDSHARED configure:8709: result: $(CC) -shared configure:8715: checking CCSHARED configure:8750: result: -fPIC configure:8754: checking LINKFORSHARED configure:8810: result: -Xlinker -export-dynamic configure:8815: checking CFLAGSFORSHARED configure:8828: result: $(CCSHARED) configure:8840: checking SHLIBS configure:8846: result: $(LIBS) configure:8851: checking for dlopen in -ldl configure:8876: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:8876: $? = 0 configure:8885: result: yes configure:8896: checking for shl_load in -ldld configure:8921: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldld -ldl >&5 /usr/bin/ld: cannot find -ldld collect2: error: ld returned 1 exit status configure:8921: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char shl_load (); | int | main () | { | return shl_load (); | ; | return 0; | } configure:8930: result: no configure:8944: checking for library containing sem_init configure:8975: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:8975: $? = 0 configure:8992: result: none required configure:9005: checking for textdomain in -lintl configure:9030: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lintl -ldl >&5 /usr/bin/ld: cannot find -lintl collect2: error: ld returned 1 exit status configure:9030: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char textdomain (); | int | main () | { | return textdomain (); | ; | return 0; | } configure:9039: result: no configure:9086: checking for t_open in -lnsl configure:9111: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lnsl -ldl >&5 /localscratch/ccrT5fId.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:114: undefined reference to `t_open' collect2: error: ld returned 1 exit status configure:9111: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char t_open (); | int | main () | { | return t_open (); | ; | return 0; | } configure:9120: result: no configure:9126: checking for socket in -lsocket configure:9151: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lsocket -ldl -ldl >&5 /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status configure:9151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char socket (); | int | main () | { | return socket (); | ; | return 0; | } configure:9160: result: no configure:9212: checking for --with-libs configure:9223: result: no configure:9282: checking for pkg-config configure:9300: found /usr/bin/pkg-config configure:9312: result: /usr/bin/pkg-config configure:9337: checking pkg-config is at least version 0.9.0 configure:9340: result: yes configure:9350: checking for --with-system-expat configure:9361: result: no configure:9365: checking for --with-system-ffi configure:9383: result: no configure:9389: checking for --with-tcltk-includes configure:9399: result: default configure:9401: checking for --with-tcltk-libs configure:9411: result: default configure:9427: checking for --with-dbmliborder configure:9446: result: configure:9452: checking for --with-signal-module configure:9464: result: yes configure:9479: checking for --with-dec-threads configure:9493: result: no configure:9504: checking for --with-threads configure:9524: result: yes configure:10041: checking if PTHREAD_SCOPE_SYSTEM is supported configure:10066: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:111:7: warning: return type defaults to 'int' [-Wimplicit-int] main() { ^ conftest.c: In function 'main': conftest.c:114:39: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] if (pthread_attr_init(&attr)) exit(-1); ^ conftest.c:114:39: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:114:39: note: include '' or provide a declaration of 'exit' conftest.c:115:65: warning: incompatible implicit declaration of built-in function 'exit' if (pthread_attr_setscope(&attr, PTHREAD_SCOPE_SYSTEM)) exit(-1); ^ conftest.c:115:65: note: include '' or provide a declaration of 'exit' conftest.c:116:52: warning: incompatible implicit declaration of built-in function 'exit' if (pthread_create(&id, &attr, foo, NULL)) exit(-1); ^ conftest.c:116:52: note: include '' or provide a declaration of 'exit' conftest.c:117:9: warning: incompatible implicit declaration of built-in function 'exit' exit(0); ^ conftest.c:117:9: note: include '' or provide a declaration of 'exit' configure:10066: $? = 0 configure:10066: ./conftest configure:10066: $? = 0 configure:10078: result: yes configure:10087: checking for pthread_sigmask configure:10087: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10087: $? = 0 configure:10087: result: yes configure:10104: checking for pthread_atfork configure:10104: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10104: $? = 0 configure:10104: result: yes configure:10118: checking if --enable-ipv6 is specified configure:10150: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10150: $? = 0 configure:10152: result: yes configure:10166: checking if RFC2553 API is available configure:10183: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10183: $? = 0 configure:10185: result: yes configure:10212: checking ipv6 stack type configure:10345: result: linux-glibc configure:10365: checking for OSX 10.5 SDK or later configure:10380: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:110:29: fatal error: Carbon/Carbon.h: No such file or directory compilation terminated. configure:10380: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | /* end confdefs.h. */ | | #include | int | main () | { | FSIORefNum fRef = 0 | ; | return 0; | } | configure:10390: result: no configure:10397: checking for --with-doc-strings configure:10415: result: yes configure:10419: checking for --with-tsc configure:10436: result: no configure:10442: checking for --with-pymalloc configure:10460: result: yes configure:10464: checking for --with-valgrind configure:10474: result: no configure:10491: checking for --with-wctype-functions configure:10508: result: no configure:10521: checking for dlopen configure:10521: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10521: $? = 0 configure:10521: result: yes configure:10534: checking DYNLOADFILE configure:10560: result: dynload_shlib.o configure:10572: checking MACHDEP_OBJS configure:10580: result: MACHDEP_OBJS configure:10602: checking for alarm configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setitimer configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getitimer configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for bind_textdomain_codeset configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for chown configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for clock configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for confstr configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for ctermid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for execv configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:144:6: warning: conflicting types for built-in function 'execv' char execv (); ^ configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for fchmod configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for fchown configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for fork configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:147:6: warning: conflicting types for built-in function 'fork' char fork (); ^ configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for fpathconf configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for ftime configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for ftruncate configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for gai_strerror configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getgroups configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getlogin configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getloadavg configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getpeername configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getpgid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getpid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getentropy configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/ccqbmRgl.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:169: undefined reference to `getentropy' collect2: error: ld returned 1 exit status configure:10602: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | /* end confdefs.h. */ | /* Define getentropy to an innocuous variant, in case declares getentropy. | For example, HP-UX 11i declares gettimeofday. */ | #define getentropy innocuous_getentropy | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getentropy (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getentropy | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getentropy (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getentropy || defined __stub___getentropy | choke me | #endif | | int | main () | { | return getentropy (); | ; | return 0; | } configure:10602: result: no configure:10602: checking for getpriority configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getresuid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getresgid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getpwent configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getspnam configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getspent configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getsid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for getwd configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/ccKBR4nP.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:176: warning: the `getwd' function is dangerous and should not be used. configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for initgroups configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for kill configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for killpg configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for lchmod configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:174:1: error: unknown type name 'choke' choke me ^ conftest.c:177:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' int ^ configure:10602: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | /* end confdefs.h. */ | /* Define lchmod to an innocuous variant, in case declares lchmod. | For example, HP-UX 11i declares gettimeofday. */ | #define lchmod innocuous_lchmod | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char lchmod (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef lchmod | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char lchmod (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_lchmod || defined __stub___lchmod | choke me | #endif | | int | main () | { | return lchmod (); | ; | return 0; | } configure:10602: result: no configure:10602: checking for lchown configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for lstat configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for mkfifo configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for mknod configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for mktime configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for mmap configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for mremap configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for nice configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for pathconf configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for pause configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for plock configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/ccGkYPhs.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:190: undefined reference to `plock' collect2: error: ld returned 1 exit status configure:10602: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | /* end confdefs.h. */ | /* Define plock to an innocuous variant, in case declares plock. | For example, HP-UX 11i declares gettimeofday. */ | #define plock innocuous_plock | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char plock (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef plock | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char plock (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_plock || defined __stub___plock | choke me | #endif | | int | main () | { | return plock (); | ; | return 0; | } configure:10602: result: no configure:10602: checking for poll configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for pthread_init configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/cc0c89ti.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:191: undefined reference to `pthread_init' collect2: error: ld returned 1 exit status configure:10602: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | /* end confdefs.h. */ | /* Define pthread_init to an innocuous variant, in case declares pthread_init. | For example, HP-UX 11i declares gettimeofday. */ | #define pthread_init innocuous_pthread_init | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pthread_init (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pthread_init | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_init (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pthread_init || defined __stub___pthread_init | choke me | #endif | | int | main () | { | return pthread_init (); | ; | return 0; | } configure:10602: result: no configure:10602: checking for putenv configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for readlink configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for realpath configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for select configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sem_open configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sem_timedwait configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sem_getvalue configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sem_unlink configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setegid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for seteuid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setgid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setlocale configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setregid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setreuid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setsid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setpgid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setpgrp configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setuid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setvbuf configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for snprintf configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:199:6: warning: conflicting types for built-in function 'snprintf' char snprintf (); ^ configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setlocale configure:10602: result: yes configure:10602: checking for setregid configure:10602: result: yes configure:10602: checking for setreuid configure:10602: result: yes configure:10602: checking for setresuid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setresgid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for setsid configure:10602: result: yes configure:10602: checking for setpgid configure:10602: result: yes configure:10602: checking for setpgrp configure:10602: result: yes configure:10602: checking for setuid configure:10602: result: yes configure:10602: checking for setvbuf configure:10602: result: yes configure:10602: checking for snprintf configure:10602: result: yes configure:10602: checking for sigaction configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for siginterrupt configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sigrelse configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for strftime configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c:214:6: warning: conflicting types for built-in function 'strftime' char strftime (); ^ configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for sysconf configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tcgetpgrp configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tcsetpgrp configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tempnam configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/cccyT22r.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:229: warning: the use of `tempnam' is dangerous, better use `mkstemp' configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for timegm configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for times configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tmpfile configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tmpnam configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/ccgqvbyc.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:233: warning: the use of `tmpnam' is dangerous, better use `mkstemp' configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for tmpnam_r configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/ccTpbXtE.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:234: warning: the use of `tmpnam_r' is dangerous, better use `mkstemp' configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for truncate configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for uname configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for unsetenv configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for utimes configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for waitpid configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for wait3 configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for wait4 configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for wcscoll configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10602: $? = 0 configure:10602: result: yes configure:10602: checking for _getpty configure:10602: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /localscratch/cc3ZgVWE.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:243: undefined reference to `_getpty' collect2: error: ld returned 1 exit status configure:10602: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | /* end confdefs.h. */ | /* Define _getpty to an innocuous variant, in case declares _getpty. | For example, HP-UX 11i declares gettimeofday. */ | #define _getpty innocuous__getpty | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _getpty (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _getpty | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _getpty (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__getpty || defined __stub____getpty | choke me | #endif | | int | main () | { | return _getpty (); | ; | return 0; | } configure:10602: result: no configure:10614: checking for chroot configure:10627: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10627: $? = 0 configure:10631: result: yes configure:10639: checking for link configure:10652: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10652: $? = 0 configure:10656: result: yes configure:10664: checking for symlink configure:10677: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10677: $? = 0 configure:10681: result: yes configure:10689: checking for fchdir configure:10702: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10702: $? = 0 configure:10706: result: yes configure:10714: checking for fsync configure:10727: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10727: $? = 0 configure:10731: result: yes configure:10739: checking for fdatasync configure:10752: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10752: $? = 0 configure:10756: result: yes configure:10764: checking for epoll configure:10777: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10777: $? = 0 configure:10781: result: yes configure:10789: checking for kqueue configure:10805: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:218:23: fatal error: sys/event.h: No such file or directory compilation terminated. configure:10805: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | /* end confdefs.h. */ | | #include | #include | | int | main () | { | int x=kqueue() | ; | return 0; | } configure:10812: result: no configure:10823: checking for ctermid_r configure:10838: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:222:11: error: 'ctermid_r' undeclared (first use in this function) void* p = ctermid_r ^ conftest.c:222:11: note: each undeclared identifier is reported only once for each function it appears in configure:10838: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | /* end confdefs.h. */ | | #include | | int | main () | { | void* p = ctermid_r | ; | return 0; | } configure:10845: result: no configure:10851: checking for flock declaration configure:10868: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10868: $? = 0 configure:10877: result: yes configure:10882: checking for flock configure:10882: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:10882: $? = 0 configure:10882: result: yes configure:10940: checking for getpagesize configure:10955: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10955: $? = 0 configure:10959: result: yes configure:10968: checking for broken unsetenv configure:10983: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:10983: $? = 0 configure:10984: result: no configure:11000: checking for true configure:11016: found /usr/bin/true configure:11027: result: true configure:11040: checking for inet_aton in -lc configure:11065: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lc -ldl >&5 configure:11065: $? = 0 configure:11074: result: yes configure:11130: checking for chflags configure:11151: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c: In function 'main': conftest.c:223:6: warning: implicit declaration of function 'chflags' [-Wimplicit-function-declaration] if(chflags(argv[0], 0) != 0) ^ /localscratch/ccOOms70.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:223: warning: warning: chflags is not implemented and will always fail configure:11151: $? = 0 configure:11151: ./conftest configure:11151: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | /* end confdefs.h. */ | | #include | #include | int main(int argc, char*argv[]) | { | if(chflags(argv[0], 0) != 0) | return 1; | return 0; | } | configure:11162: result: no configure:11179: checking for lchflags configure:11200: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 conftest.c: In function 'main': conftest.c:223:6: warning: implicit declaration of function 'lchflags' [-Wimplicit-function-declaration] if(lchflags(argv[0], 0) != 0) ^ /localscratch/ccgDyzvB.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:223: undefined reference to `lchflags' collect2: error: ld returned 1 exit status configure:11200: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | /* end confdefs.h. */ | | #include | #include | int main(int argc, char*argv[]) | { | if(lchflags(argv[0], 0) != 0) | return 1; | return 0; | } | configure:11211: result: no configure:11237: checking for inflateCopy in -lz configure:11262: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lz -ldl >&5 configure:11262: $? = 0 configure:11271: result: yes configure:11287: checking for hstrerror configure:11302: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:11302: $? = 0 configure:11306: result: yes configure:11316: checking for inet_aton configure:11334: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 configure:11334: $? = 0 configure:11338: result: yes configure:11348: checking for inet_pton configure:11366: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:11366: $? = 0 configure:11370: result: yes configure:11380: checking for setgroups configure:11398: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:11398: $? = 0 configure:11402: result: yes configure:11415: checking for openpty configure:11415: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl >&5 /usr/bin/ld: /localscratch/cc5Pr4ie.o: undefined reference to symbol 'openpty@@GLIBC_2.2.5' //usr/lib64/libutil.so.1: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status configure:11415: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | /* end confdefs.h. */ | /* Define openpty to an innocuous variant, in case declares openpty. | For example, HP-UX 11i declares gettimeofday. */ | #define openpty innocuous_openpty | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char openpty (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef openpty | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char openpty (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_openpty || defined __stub___openpty | choke me | #endif | | int | main () | { | return openpty (); | ; | return 0; | } configure:11415: result: no configure:11422: checking for openpty in -lutil configure:11447: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lutil -ldl >&5 configure:11447: $? = 0 configure:11456: result: yes configure:11512: checking for forkpty configure:11512: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11512: $? = 0 configure:11512: result: yes configure:11611: checking for memmove configure:11611: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c:248:6: warning: conflicting types for built-in function 'memmove' char memmove (); ^ configure:11611: $? = 0 configure:11611: result: yes configure:11625: checking for fseek64 configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 /localscratch/cc9dG8DM.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:260: undefined reference to `fseek64' collect2: error: ld returned 1 exit status configure:11625: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | /* end confdefs.h. */ | /* Define fseek64 to an innocuous variant, in case declares fseek64. | For example, HP-UX 11i declares gettimeofday. */ | #define fseek64 innocuous_fseek64 | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char fseek64 (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef fseek64 | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fseek64 (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_fseek64 || defined __stub___fseek64 | choke me | #endif | | int | main () | { | return fseek64 (); | ; | return 0; | } configure:11625: result: no configure:11625: checking for fseeko configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11625: $? = 0 configure:11625: result: yes configure:11625: checking for fstatvfs configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11625: $? = 0 configure:11625: result: yes configure:11625: checking for ftell64 configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 /localscratch/ccrq5h1e.o: In function `main': /Users/gcheng6/build/pylith/python-build/conftest.c:262: undefined reference to `ftell64' collect2: error: ld returned 1 exit status configure:11625: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | /* end confdefs.h. */ | /* Define ftell64 to an innocuous variant, in case declares ftell64. | For example, HP-UX 11i declares gettimeofday. */ | #define ftell64 innocuous_ftell64 | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char ftell64 (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef ftell64 | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ftell64 (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_ftell64 || defined __stub___ftell64 | choke me | #endif | | int | main () | { | return ftell64 (); | ; | return 0; | } configure:11625: result: no configure:11625: checking for ftello configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11625: $? = 0 configure:11625: result: yes configure:11625: checking for statvfs configure:11625: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11625: $? = 0 configure:11625: result: yes configure:11635: checking for dup2 configure:11635: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11635: $? = 0 configure:11635: result: yes configure:11648: checking for getcwd configure:11648: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11648: $? = 0 configure:11648: result: yes configure:11661: checking for strdup configure:11661: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c:255:6: warning: conflicting types for built-in function 'strdup' char strdup (); ^ configure:11661: $? = 0 configure:11661: result: yes configure:11677: checking for getpgrp configure:11677: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11677: $? = 0 configure:11677: result: yes configure:11693: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:238:1: error: too many arguments to function 'getpgrp' getpgrp(0); ^ In file included from conftest.c:234:0: /usr/include/unistd.h:636:16: note: declared here extern __pid_t getpgrp (void) __THROW; ^ configure:11693: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | /* end confdefs.h. */ | #include | int | main () | { | getpgrp(0); | ; | return 0; | } configure:11705: checking for setpgrp configure:11705: result: yes configure:11721: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:239:1: error: too many arguments to function 'setpgrp' setpgrp(0,0); ^ In file included from conftest.c:235:0: /usr/include/unistd.h:672:12: note: declared here extern int setpgrp (void) __THROW; ^ configure:11721: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | /* end confdefs.h. */ | #include | int | main () | { | setpgrp(0,0); | ; | return 0; | } configure:11733: checking for gettimeofday configure:11733: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11733: $? = 0 configure:11733: result: yes configure:11749: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:11749: $? = 0 configure:11763: checking for major configure:11786: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11786: $? = 0 configure:11791: result: yes configure:11805: checking for getaddrinfo configure:11823: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11823: $? = 0 configure:11830: result: yes configure:11834: checking getaddrinfo bug configure:11940: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11940: $? = 0 configure:11940: ./conftest configure:11940: $? = 0 configure:11953: result: no configure:11972: checking for getnameinfo configure:11972: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:11972: $? = 0 configure:11972: result: yes configure:11983: checking whether time.h and sys/time.h may both be included configure:12003: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12003: $? = 0 configure:12010: result: yes configure:12018: checking whether struct tm is in sys/time.h or time.h configure:12038: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12038: $? = 0 configure:12045: result: time.h configure:12053: checking for struct tm.tm_zone configure:12053: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12053: $? = 0 configure:12053: result: yes configure:12120: checking for struct stat.st_rdev configure:12120: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12120: $? = 0 configure:12120: result: yes configure:12130: checking for struct stat.st_blksize configure:12130: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12130: $? = 0 configure:12130: result: yes configure:12140: checking for struct stat.st_flags configure:12140: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:12: error: 'struct stat' has no member named 'st_flags' if (ac_aggr.st_flags) ^ configure:12140: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (ac_aggr.st_flags) | return 0; | ; | return 0; | } configure:12140: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:19: error: 'struct stat' has no member named 'st_flags' if (sizeof ac_aggr.st_flags) ^ configure:12140: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (sizeof ac_aggr.st_flags) | return 0; | ; | return 0; | } configure:12140: result: no configure:12150: checking for struct stat.st_gen configure:12150: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:12: error: 'struct stat' has no member named 'st_gen' if (ac_aggr.st_gen) ^ configure:12150: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (ac_aggr.st_gen) | return 0; | ; | return 0; | } configure:12150: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:19: error: 'struct stat' has no member named 'st_gen' if (sizeof ac_aggr.st_gen) ^ configure:12150: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (sizeof ac_aggr.st_gen) | return 0; | ; | return 0; | } configure:12150: result: no configure:12160: checking for struct stat.st_birthtime configure:12160: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:12: error: 'struct stat' has no member named 'st_birthtime' if (ac_aggr.st_birthtime) ^ configure:12160: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (ac_aggr.st_birthtime) | return 0; | ; | return 0; | } configure:12160: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:281:19: error: 'struct stat' has no member named 'st_birthtime' if (sizeof ac_aggr.st_birthtime) ^ configure:12160: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static struct stat ac_aggr; | if (sizeof ac_aggr.st_birthtime) | return 0; | ; | return 0; | } configure:12160: result: no configure:12170: checking for struct stat.st_blocks configure:12170: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12170: $? = 0 configure:12170: result: yes configure:12181: checking for time.h that defines altzone configure:12198: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:249:8: error: 'altzone' undeclared (first use in this function) return altzone; ^ conftest.c:249:8: note: each undeclared identifier is reported only once for each function it appears in configure:12198: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | /* end confdefs.h. */ | #include | int | main () | { | return altzone; | ; | return 0; | } configure:12207: result: no configure:12216: checking whether sys/select.h and sys/time.h may both be included configure:12233: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12233: $? = 0 configure:12242: result: yes configure:12245: checking for addrinfo configure:12261: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12261: $? = 0 configure:12269: result: yes configure:12277: checking for sockaddr_storage configure:12295: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12295: $? = 0 configure:12303: result: yes configure:12313: checking whether char is unsigned configure:12332: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12332: $? = 0 configure:12339: result: no configure:12346: checking for an ANSI C-conforming const configure:12412: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12412: $? = 0 configure:12419: result: yes configure:12429: checking for working volatile configure:12442: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12442: $? = 0 configure:12451: result: yes configure:12455: checking for working signed char configure:12468: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12468: $? = 0 configure:12477: result: yes configure:12481: checking for prototypes configure:12494: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12494: $? = 0 configure:12501: result: yes configure:12505: checking for variable length prototypes and stdarg.h configure:12528: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12528: $? = 0 configure:12537: result: yes configure:12541: checking for socketpair configure:12557: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12557: $? = 0 configure:12561: result: yes configure:12571: checking if sockaddr has sa_len member configure:12586: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:257:2: error: 'struct sockaddr' has no member named 'sa_len' x.sa_len = 0; ^ configure:12586: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | struct sockaddr x; | x.sa_len = 0; | ; | return 0; | } configure:12593: result: no configure:12600: checking whether va_list is an array configure:12619: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:261:29: error: assignment to expression with array type va_list list1, list2; list1 = list2; ^ configure:12619: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | /* end confdefs.h. */ | | #ifdef HAVE_STDARG_PROTOTYPES | #include | #else | #include | #endif | | int | main () | { | va_list list1, list2; list1 = list2; | ; | return 0; | } configure:12630: result: yes configure:12636: checking for gethostbyname_r configure:12636: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:12636: $? = 0 configure:12636: result: yes configure:12641: checking gethostbyname_r with 6 args configure:12666: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:12666: $? = 0 configure:12673: result: yes configure:12789: checking for __fpu_control configure:12789: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:12789: $? = 0 configure:12789: result: yes configure:12843: checking for --with-fpectl configure:12860: result: no configure:12872: checking for --with-libm=STRING configure:12889: result: default LIBM="-lm" configure:12896: checking for --with-libc=STRING configure:12913: result: default LIBC="" configure:12922: checking whether C doubles are little-endian IEEE 754 binary64 configure:12944: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:12944: $? = 0 configure:12944: ./conftest configure:12944: $? = 0 configure:12955: result: yes configure:12964: checking whether C doubles are big-endian IEEE 754 binary64 configure:12986: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:12986: $? = 0 configure:12986: ./conftest configure:12986: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | /* end confdefs.h. */ | | #include | int main() { | double x = 9006104071832581.0; | if (memcmp(&x, "\x43\x3f\xff\x01\x02\x03\x04\x05", 8) == 0) | return 0; | else | return 1; | } | configure:12997: result: no configure:13010: checking whether C doubles are ARM mixed-endian IEEE 754 binary64 configure:13032: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13032: $? = 0 configure:13032: ./conftest configure:13032: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | /* end confdefs.h. */ | | #include | int main() { | double x = 9006104071832581.0; | if (memcmp(&x, "\x01\xff\x3f\x43\x05\x04\x03\x02", 8) == 0) | return 0; | else | return 1; | } | configure:13043: result: no configure:13062: checking whether we can use gcc inline assembler to get and set x87 control word configure:13079: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13079: $? = 0 configure:13086: result: yes configure:13100: checking for x87-style double rounding configure:13131: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -fno-strict-aliasing -fp-model strict -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 gcc: error: strict: No such file or directory gcc: error: unrecognized command line option '-fp-model' configure:13131: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | /* end confdefs.h. */ | | #include | #include | int main() { | volatile double x, y, z; | /* 1./(1-2**-53) -> 1+2**-52 (correct), 1.0 (double rounding) */ | x = 0.99999999999999989; /* 1-2**-53 */ | y = 1./x; | if (y != 1.) | exit(0); | /* 1e16+2.99999 -> 1e16+2. (correct), 1e16+4. (double rounding) */ | x = 1e16; | y = 2.99999; | z = x + y; | if (z != 1e16+4.) | exit(0); | /* both tests show evidence of double rounding */ | exit(1); | } | configure:13141: result: yes configure:13159: checking whether tanh preserves the sign of zero configure:13183: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 configure:13183: $? = 0 configure:13183: ./conftest configure:13183: $? = 0 configure:13194: result: yes configure:13206: checking for acosh configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:282:6: warning: conflicting types for built-in function 'acosh' char acosh (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for asinh configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:283:6: warning: conflicting types for built-in function 'asinh' char asinh (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for atanh configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:284:6: warning: conflicting types for built-in function 'atanh' char atanh (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for copysign configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:285:6: warning: conflicting types for built-in function 'copysign' char copysign (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for erf configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:286:6: warning: conflicting types for built-in function 'erf' char erf (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for erfc configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:287:6: warning: conflicting types for built-in function 'erfc' char erfc (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for expm1 configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:288:6: warning: conflicting types for built-in function 'expm1' char expm1 (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for finite configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:289:6: warning: conflicting types for built-in function 'finite' char finite (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13206: checking for gamma configure:13206: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:290:6: warning: conflicting types for built-in function 'gamma' char gamma (); ^ configure:13206: $? = 0 configure:13206: result: yes configure:13218: checking for hypot configure:13218: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:291:6: warning: conflicting types for built-in function 'hypot' char hypot (); ^ configure:13218: $? = 0 configure:13218: result: yes configure:13218: checking for lgamma configure:13218: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:292:6: warning: conflicting types for built-in function 'lgamma' char lgamma (); ^ configure:13218: $? = 0 configure:13218: result: yes configure:13218: checking for log1p configure:13218: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:293:6: warning: conflicting types for built-in function 'log1p' char log1p (); ^ configure:13218: $? = 0 configure:13218: result: yes configure:13218: checking for round configure:13218: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:294:6: warning: conflicting types for built-in function 'round' char round (); ^ configure:13218: $? = 0 configure:13218: result: yes configure:13218: checking for tgamma configure:13218: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil -lm >&5 conftest.c:295:6: warning: conflicting types for built-in function 'tgamma' char tgamma (); ^ configure:13218: $? = 0 configure:13218: result: yes configure:13227: checking whether isinf is declared configure:13227: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:13227: $? = 0 configure:13227: result: yes configure:13238: checking whether isnan is declared configure:13238: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:13238: $? = 0 configure:13238: result: yes configure:13249: checking whether isfinite is declared configure:13249: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:13249: $? = 0 configure:13249: result: yes configure:13269: checking whether POSIX semaphores are enabled configure:13298: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13298: $? = 0 configure:13298: ./conftest configure:13298: $? = 0 configure:13310: result: yes configure:13320: checking for broken sem_getvalue configure:13353: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13353: $? = 0 configure:13353: ./conftest configure:13353: $? = 0 configure:13365: result: no configure:13375: checking digit size for Python's longs configure:13398: result: no value specified configure:13404: checking wchar.h usability configure:13404: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:13404: $? = 0 configure:13404: result: yes configure:13404: checking wchar.h presence configure:13404: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c configure:13404: $? = 0 configure:13404: result: yes configure:13404: checking for wchar.h configure:13404: result: yes configure:13426: checking size of wchar_t configure:13431: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13431: $? = 0 configure:13431: ./conftest configure:13431: $? = 0 configure:13446: result: 4 configure:13458: checking for UCS-4 tcl configure:13476: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:281:3: error: #error "NOT UCS4_TCL" # error "NOT UCS4_TCL" ^ configure:13476: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | /* end confdefs.h. */ | | #include | #if TCL_UTF_MAX != 6 | # error "NOT UCS4_TCL" | #endif | int | main () | { | | ; | return 0; | } configure:13485: result: no configure:13492: checking whether wchar_t is signed configure:13512: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c: In function 'main': conftest.c:283:9: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit((((wchar_t) -1) < ((wchar_t) 0)) ? 0 : 1); ^ conftest.c:283:9: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:283:9: note: include '' or provide a declaration of 'exit' configure:13512: $? = 0 configure:13512: ./conftest configure:13512: $? = 0 configure:13523: result: yes configure:13527: checking what type to use for unicode configure:13599: result: unsigned short configure:13604: checking whether byte ordering is bigendian configure:13619: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c:282:9: error: unknown type name 'not' not a universal capable compiler ^ conftest.c:282:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal' not a universal capable compiler ^ conftest.c:282:15: error: unknown type name 'universal' configure:13619: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:13664: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:13664: $? = 0 configure:13682: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:288:4: error: unknown type name 'not' not big endian ^ conftest.c:288:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^ configure:13682: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:13810: result: no configure:13831: checking whether right shift extends the sign bit configure:13849: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c: In function 'main': conftest.c:284:2: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit(((-1)>>3 == -1) ? 0 : 1); ^ conftest.c:284:2: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:284:2: note: include '' or provide a declaration of 'exit' configure:13849: $? = 0 configure:13849: ./conftest configure:13849: $? = 0 configure:13860: result: yes configure:13870: checking for getc_unlocked() and friends configure:13892: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:13892: $? = 0 configure:13901: result: yes configure:13918: checking how to link readline libs configure:13945: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readline (); | int | main () | { | return readline (); | ; | return 0; | } configure:13945: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lncursesw -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readline (); | int | main () | { | return readline (); | ; | return 0; | } configure:13945: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lncurses -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readline (); | int | main () | { | return readline (); | ; | return 0; | } configure:13945: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lcurses -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readline (); | int | main () | { | return readline (); | ; | return 0; | } configure:13945: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readline (); | int | main () | { | return readline (); | ; | return 0; | } configure:13957: result: none configure:13968: checking for rl_callback_handler_install in -lreadline configure:13993: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lreadline -ltermcap -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:13993: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rl_callback_handler_install (); | int | main () | { | return rl_callback_handler_install (); | ; | return 0; | } configure:14002: result: no configure:14016: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:282:31: fatal error: readline/readline.h: No such file or directory compilation terminated. configure:14016: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | #include configure:14054: checking for rl_pre_input_hook in -lreadline configure:14079: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lreadline -ltermcap -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:14079: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rl_pre_input_hook (); | int | main () | { | return rl_pre_input_hook (); | ; | return 0; | } configure:14088: result: no configure:14098: checking for rl_completion_display_matches_hook in -lreadline configure:14123: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lreadline -ltermcap -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:14123: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rl_completion_display_matches_hook (); | int | main () | { | return rl_completion_display_matches_hook (); | ; | return 0; | } configure:14132: result: no configure:14142: checking for rl_resize_terminal in -lreadline configure:14167: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lreadline -ltermcap -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:14167: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rl_resize_terminal (); | int | main () | { | return rl_resize_terminal (); | ; | return 0; | } configure:14176: result: no configure:14186: checking for rl_completion_matches in -lreadline configure:14211: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -lreadline -lreadline -ltermcap -lreadline -ltermcap -ldl -lutil >&5 /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline /usr/bin/ld: cannot find -lreadline collect2: error: ld returned 1 exit status configure:14211: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rl_completion_matches (); | int | main () | { | return rl_completion_matches (); | ; | return 0; | } configure:14220: result: no configure:14234: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c conftest.c:282:31: fatal error: readline/readline.h: No such file or directory compilation terminated. configure:14234: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | #include configure:14261: checking for broken nice() configure:14282: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c: In function 'main': conftest.c:285:13: warning: implicit declaration of function 'nice' [-Wimplicit-function-declaration] int val1 = nice(1); ^ conftest.c:287:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit(0); ^ conftest.c:287:3: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:287:3: note: include '' or provide a declaration of 'exit' conftest.c:288:2: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^ conftest.c:288:2: note: include '' or provide a declaration of 'exit' configure:14282: $? = 0 configure:14282: ./conftest configure:14282: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | int main() | { | int val1 = nice(1); | if (val1 != -1 && val1 == nice(2)) | exit(0); | exit(1); | } | configure:14293: result: no configure:14302: checking for broken poll() configure:14332: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 conftest.c: In function 'main': conftest.c:290:5: warning: implicit declaration of function 'close' [-Wimplicit-function-declaration] close (42); ^ configure:14332: $? = 0 configure:14332: ./conftest configure:14332: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | /* end confdefs.h. */ | | #include | | int main() | { | struct pollfd poll_struct = { 42, POLLIN|POLLPRI|POLLOUT, 0 }; | int poll_test; | | close (42); | | poll_test = poll(&poll_struct, 1, 0); | if (poll_test < 0) | return 0; | else if (poll_test == 0 && poll_struct.revents != POLLNVAL) | return 0; | else | return 1; | } | configure:14343: result: no configure:14355: checking for struct tm.tm_zone configure:14355: result: yes configure:14424: checking for working tzset() configure:14500: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:14500: $? = 0 configure:14500: ./conftest configure:14500: $? = 0 configure:14511: result: yes configure:14521: checking for tv_nsec in struct stat configure:14540: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:14540: $? = 0 configure:14548: result: yes configure:14558: checking for tv_nsec2 in struct stat configure:14577: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:292:3: error: 'struct stat' has no member named 'st_mtimespec' st.st_mtimespec.tv_nsec = 1; ^ configure:14577: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_WORKING_TZSET 1 | #define HAVE_STAT_TV_NSEC 1 | /* end confdefs.h. */ | #include | int | main () | { | | struct stat st; | st.st_mtimespec.tv_nsec = 1; | | ; | return 0; | } configure:14585: result: no configure:14601: checking curses.h usability configure:14601: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14601: $? = 0 configure:14601: result: yes configure:14601: checking curses.h presence configure:14601: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c configure:14601: $? = 0 configure:14601: result: yes configure:14601: checking for curses.h configure:14601: result: yes configure:14601: checking ncurses.h usability configure:14601: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14601: $? = 0 configure:14601: result: yes configure:14601: checking ncurses.h presence configure:14601: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c configure:14601: $? = 0 configure:14601: result: yes configure:14601: checking for ncurses.h configure:14601: result: yes configure:14615: checking for term.h configure:14615: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14615: $? = 0 configure:14615: result: yes configure:14632: checking whether mvwdelch is an expression configure:14651: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14651: $? = 0 configure:14659: result: yes configure:14673: checking whether WINDOW has _flags configure:14695: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14695: $? = 0 configure:14703: result: yes configure:14714: checking for is_pad configure:14731: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14731: $? = 0 configure:14735: result: yes configure:14744: checking for is_term_resized configure:14757: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14757: $? = 0 configure:14761: result: yes configure:14770: checking for resize_term configure:14783: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14783: $? = 0 configure:14787: result: yes configure:14796: checking for resizeterm configure:14809: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14809: $? = 0 configure:14813: result: yes configure:14822: checking for immedok configure:14839: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14839: $? = 0 configure:14843: result: yes configure:14852: checking for syncok configure:14869: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14869: $? = 0 configure:14873: result: yes configure:14882: checking for wchgat configure:14899: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14899: $? = 0 configure:14903: result: yes configure:14912: checking for filter configure:14929: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14929: $? = 0 configure:14933: result: yes configure:14942: checking for has_key configure:14959: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14959: $? = 0 configure:14963: result: yes configure:14972: checking for typeahead configure:14989: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:14989: $? = 0 configure:14993: result: yes configure:15002: checking for use_env configure:15019: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -I/usr/include/ncursesw conftest.c >&5 configure:15019: $? = 0 configure:15023: result: yes configure:15034: checking for device files configure:15054: checking for /dev/ptmx configure:15067: result: yes configure:15078: checking for /dev/ptc configure:15091: result: no configure:15105: checking for %lld and %llu printf() format support configure:15176: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:15176: $? = 0 configure:15176: ./conftest configure:15176: $? = 0 configure:15188: result: yes configure:15205: checking for %zd printf() format support configure:15253: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:15253: $? = 0 configure:15253: ./conftest configure:15253: $? = 0 configure:15263: result: yes configure:15271: checking for socklen_t configure:15271: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 configure:15271: $? = 0 configure:15271: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -c -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include conftest.c >&5 conftest.c: In function 'main': conftest.c:317:24: error: expected expression before ')' token if (sizeof ((socklen_t))) ^ configure:15271: $? = 1 configure: failed program was: | /* confdefs.h */ | #define _GNU_SOURCE 1 | #define _NETBSD_SOURCE 1 | #define __BSD_VISIBLE 1 | #define _BSD_TYPES 1 | #define _DARWIN_C_SOURCE 1 | #define _XOPEN_SOURCE 600 | #define _XOPEN_SOURCE_EXTENDED 1 | #define _POSIX_C_SOURCE 200112L | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define Py_ENABLE_SHARED 1 | #define STDC_HEADERS 1 | #define HAVE_ASM_TYPES_H 1 | #define HAVE_CRYPT_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBINTL_H 1 | #define HAVE_POLL_H 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_SHADOW_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_POLL_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_PTY_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_NETPACKET_PACKET_H 1 | #define HAVE_SYSEXITS_H 1 | #define HAVE_LINUX_TIPC_H 1 | #define HAVE_SPAWN_H 1 | #define HAVE_UTIL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_SYS_SYSMACROS_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_LINUX_NETLINK_H 1 | #define HAVE_MAKEDEV 1 | #define _LARGEFILE_SOURCE 1 | #define _FILE_OFFSET_BITS 64 | #if defined(SCO_DS) | #undef _OFF_T | #endif | #define RETSIGTYPE void | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_SSIZE_T 1 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_VOID_P 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FPOS_T 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PID_T 4 | #define HAVE_LONG_LONG 1 | #define SIZEOF_LONG_LONG 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define HAVE_C99_BOOL 1 | #define SIZEOF__BOOL 1 | #define HAVE_UINTPTR_T 1 | #define SIZEOF_UINTPTR_T 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_TIME_T 8 | #define SIZEOF_PTHREAD_T 8 | #define SHLIB_EXT ".so" | #define HAVE_LIBDL 1 | #define WITH_THREAD 1 | #define _REENTRANT 1 | #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 | #define HAVE_PTHREAD_SIGMASK 1 | #define HAVE_PTHREAD_ATFORK 1 | #define ENABLE_IPV6 1 | #define WITH_DOC_STRINGS 1 | #define WITH_PYMALLOC 1 | #define HAVE_DLOPEN 1 | #define HAVE_DYNAMIC_LOADING 1 | #define HAVE_ALARM 1 | #define HAVE_SETITIMER 1 | #define HAVE_GETITIMER 1 | #define HAVE_BIND_TEXTDOMAIN_CODESET 1 | #define HAVE_CHOWN 1 | #define HAVE_CLOCK 1 | #define HAVE_CONFSTR 1 | #define HAVE_CTERMID 1 | #define HAVE_EXECV 1 | #define HAVE_FCHMOD 1 | #define HAVE_FCHOWN 1 | #define HAVE_FORK 1 | #define HAVE_FPATHCONF 1 | #define HAVE_FTIME 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GAI_STRERROR 1 | #define HAVE_GETGROUPS 1 | #define HAVE_GETLOGIN 1 | #define HAVE_GETLOADAVG 1 | #define HAVE_GETPEERNAME 1 | #define HAVE_GETPGID 1 | #define HAVE_GETPID 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_GETRESUID 1 | #define HAVE_GETRESGID 1 | #define HAVE_GETPWENT 1 | #define HAVE_GETSPNAM 1 | #define HAVE_GETSPENT 1 | #define HAVE_GETSID 1 | #define HAVE_GETWD 1 | #define HAVE_INITGROUPS 1 | #define HAVE_KILL 1 | #define HAVE_KILLPG 1 | #define HAVE_LCHOWN 1 | #define HAVE_LSTAT 1 | #define HAVE_MKFIFO 1 | #define HAVE_MKNOD 1 | #define HAVE_MKTIME 1 | #define HAVE_MMAP 1 | #define HAVE_MREMAP 1 | #define HAVE_NICE 1 | #define HAVE_PATHCONF 1 | #define HAVE_PAUSE 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READLINK 1 | #define HAVE_REALPATH 1 | #define HAVE_SELECT 1 | #define HAVE_SEM_OPEN 1 | #define HAVE_SEM_TIMEDWAIT 1 | #define HAVE_SEM_GETVALUE 1 | #define HAVE_SEM_UNLINK 1 | #define HAVE_SETEGID 1 | #define HAVE_SETEUID 1 | #define HAVE_SETGID 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SETREGID 1 | #define HAVE_SETREUID 1 | #define HAVE_SETRESUID 1 | #define HAVE_SETRESGID 1 | #define HAVE_SETSID 1 | #define HAVE_SETPGID 1 | #define HAVE_SETPGRP 1 | #define HAVE_SETUID 1 | #define HAVE_SETVBUF 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGINTERRUPT 1 | #define HAVE_SIGRELSE 1 | #define HAVE_STRFTIME 1 | #define HAVE_SYSCONF 1 | #define HAVE_TCGETPGRP 1 | #define HAVE_TCSETPGRP 1 | #define HAVE_TEMPNAM 1 | #define HAVE_TIMEGM 1 | #define HAVE_TIMES 1 | #define HAVE_TMPFILE 1 | #define HAVE_TMPNAM 1 | #define HAVE_TMPNAM_R 1 | #define HAVE_TRUNCATE 1 | #define HAVE_UNAME 1 | #define HAVE_UNSETENV 1 | #define HAVE_UTIMES 1 | #define HAVE_WAITPID 1 | #define HAVE_WAIT3 1 | #define HAVE_WAIT4 1 | #define HAVE_WCSCOLL 1 | #define HAVE_CHROOT 1 | #define HAVE_LINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_FCHDIR 1 | #define HAVE_FSYNC 1 | #define HAVE_FDATASYNC 1 | #define HAVE_EPOLL 1 | #define HAVE_FLOCK 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_ZLIB_COPY 1 | #define HAVE_HSTRERROR 1 | #define HAVE_INET_ATON 1 | #define HAVE_INET_PTON 1 | #define HAVE_SETGROUPS 1 | #define HAVE_OPENPTY 1 | #define HAVE_FORKPTY 1 | #define HAVE_MEMMOVE 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTATVFS 1 | #define HAVE_FTELLO 1 | #define HAVE_STATVFS 1 | #define HAVE_DUP2 1 | #define HAVE_GETCWD 1 | #define HAVE_STRDUP 1 | #define HAVE_GETPGRP 1 | #define HAVE_SETPGRP 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_DEVICE_MACROS 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_STAT_ST_RDEV 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_STRUCT_STAT_ST_BLOCKS 1 | #define SYS_SELECT_WITH_SYS_TIME 1 | #define HAVE_ADDRINFO 1 | #define HAVE_SOCKADDR_STORAGE 1 | #define HAVE_PROTOTYPES 1 | #define HAVE_STDARG_PROTOTYPES 1 | #define HAVE_SOCKETPAIR 1 | #define VA_LIST_IS_ARRAY 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R 1 | #define HAVE_GETHOSTBYNAME_R_6_ARG 1 | #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 | #define HAVE_GCC_ASM_FOR_X87 1 | #define X87_DOUBLE_ROUNDING 1 | #define TANH_PRESERVES_ZERO_SIGN 1 | #define HAVE_ACOSH 1 | #define HAVE_ASINH 1 | #define HAVE_ATANH 1 | #define HAVE_COPYSIGN 1 | #define HAVE_ERF 1 | #define HAVE_ERFC 1 | #define HAVE_EXPM1 1 | #define HAVE_FINITE 1 | #define HAVE_GAMMA 1 | #define HAVE_HYPOT 1 | #define HAVE_LGAMMA 1 | #define HAVE_LOG1P 1 | #define HAVE_ROUND 1 | #define HAVE_TGAMMA 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_WCHAR_H 1 | #define SIZEOF_WCHAR_T 4 | #define Py_UNICODE_SIZE 2 | #define Py_USING_UNICODE 1 | #define PY_UNICODE_TYPE unsigned short | #define HAVE_GETC_UNLOCKED 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_WORKING_TZSET 1 | #define HAVE_STAT_TV_NSEC 1 | #define HAVE_CURSES_H 1 | #define HAVE_NCURSES_H 1 | #define HAVE_TERM_H 1 | #define MVWDELCH_IS_EXPRESSION 1 | #define WINDOW_HAS_FLAGS 1 | #define HAVE_CURSES_IS_PAD 1 | #define HAVE_CURSES_IS_TERM_RESIZED 1 | #define HAVE_CURSES_RESIZE_TERM 1 | #define HAVE_CURSES_RESIZETERM 1 | #define HAVE_CURSES_IMMEDOK 1 | #define HAVE_CURSES_SYNCOK 1 | #define HAVE_CURSES_WCHGAT 1 | #define HAVE_CURSES_FILTER 1 | #define HAVE_CURSES_HAS_KEY 1 | #define HAVE_CURSES_TYPEAHEAD 1 | #define HAVE_CURSES_USE_ENV 1 | #define HAVE_DEV_PTMX 1 | #define PY_FORMAT_LONG_LONG "ll" | #define PY_FORMAT_SIZE_T "z" | /* end confdefs.h. */ | | #ifdef HAVE_SYS_TYPES_H | #include | #endif | #ifdef HAVE_SYS_SOCKET_H | #include | #endif | | | int | main () | { | if (sizeof ((socklen_t))) | return 0; | ; | return 0; | } configure:15271: result: yes configure:15306: checking for build directories configure:15316: checking for --with-computed-gotos configure:15340: result: no value specified configure:15345: checking whether /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc supports computed gotos configure:15372: /usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -o conftest -g -O2 -I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib conftest.c -ldl -lutil >&5 configure:15372: $? = 0 configure:15372: ./conftest configure:15372: $? = 0 configure:15383: result: yes configure:15392: result: done configure:15396: checking for ensurepip configure:15416: result: no configure:15540: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by python config.status 2.7, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on argon-login-1.hpc config.status:1240: creating Makefile.pre config.status:1240: creating Modules/Setup.config config.status:1240: creating Misc/python.pc config.status:1240: creating Modules/ld_so_aix config.status:1240: creating pyconfig.h ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_big_endian_double=no ac_cv_broken_nice=no ac_cv_broken_poll=no ac_cv_broken_sem_getvalue=no ac_cv_buggy_getaddrinfo=no ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_char_unsigned=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_int32_t=yes ac_cv_c_int64_t=yes ac_cv_c_uint32_t=yes ac_cv_c_uint64_t=yes ac_cv_computed_gotos=yes ac_cv_cxx_thread=no ac_cv_env_CC_set=set ac_cv_env_CC_value=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set=set ac_cv_env_PKG_CONFIG_PATH_value=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libtirpc-1.2.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/zlib-1.2.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libpciaccess-0.16/lib/pkgconfig ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_file__dev_ptc=no ac_cv_file__dev_ptmx=yes ac_cv_flock_decl=yes ac_cv_func___fpu_control=yes ac_cv_func__getpty=no ac_cv_func_acosh=yes ac_cv_func_alarm=yes ac_cv_func_asinh=yes ac_cv_func_atanh=yes ac_cv_func_bind_textdomain_codeset=yes ac_cv_func_chown=yes ac_cv_func_clock=yes ac_cv_func_confstr=yes ac_cv_func_copysign=yes ac_cv_func_ctermid=yes ac_cv_func_dlopen=yes ac_cv_func_dup2=yes ac_cv_func_erf=yes ac_cv_func_erfc=yes ac_cv_func_execv=yes ac_cv_func_expm1=yes ac_cv_func_fchmod=yes ac_cv_func_fchown=yes ac_cv_func_finite=yes ac_cv_func_flock=yes ac_cv_func_fork=yes ac_cv_func_forkpty=yes ac_cv_func_fpathconf=yes ac_cv_func_fseek64=no ac_cv_func_fseeko=yes ac_cv_func_fstatvfs=yes ac_cv_func_ftell64=no ac_cv_func_ftello=yes ac_cv_func_ftime=yes ac_cv_func_ftruncate=yes ac_cv_func_gai_strerror=yes ac_cv_func_gamma=yes ac_cv_func_getcwd=yes ac_cv_func_getentropy=no ac_cv_func_getgroups=yes ac_cv_func_gethostbyname_r=yes ac_cv_func_getitimer=yes ac_cv_func_getloadavg=yes ac_cv_func_getlogin=yes ac_cv_func_getnameinfo=yes ac_cv_func_getpeername=yes ac_cv_func_getpgid=yes ac_cv_func_getpgrp=yes ac_cv_func_getpid=yes ac_cv_func_getpriority=yes ac_cv_func_getpwent=yes ac_cv_func_getresgid=yes ac_cv_func_getresuid=yes ac_cv_func_getsid=yes ac_cv_func_getspent=yes ac_cv_func_getspnam=yes ac_cv_func_gettimeofday=yes ac_cv_func_getwd=yes ac_cv_func_hypot=yes ac_cv_func_initgroups=yes ac_cv_func_kill=yes ac_cv_func_killpg=yes ac_cv_func_lchmod=no ac_cv_func_lchown=yes ac_cv_func_lgamma=yes ac_cv_func_log1p=yes ac_cv_func_lstat=yes ac_cv_func_memmove=yes ac_cv_func_mkfifo=yes ac_cv_func_mknod=yes ac_cv_func_mktime=yes ac_cv_func_mmap=yes ac_cv_func_mremap=yes ac_cv_func_nice=yes ac_cv_func_openpty=no ac_cv_func_pathconf=yes ac_cv_func_pause=yes ac_cv_func_plock=no ac_cv_func_poll=yes ac_cv_func_pthread_atfork=yes ac_cv_func_pthread_init=no ac_cv_func_pthread_sigmask=yes ac_cv_func_putenv=yes ac_cv_func_readlink=yes ac_cv_func_realpath=yes ac_cv_func_round=yes ac_cv_func_select=yes ac_cv_func_sem_getvalue=yes ac_cv_func_sem_open=yes ac_cv_func_sem_timedwait=yes ac_cv_func_sem_unlink=yes ac_cv_func_setegid=yes ac_cv_func_seteuid=yes ac_cv_func_setgid=yes ac_cv_func_setitimer=yes ac_cv_func_setlocale=yes ac_cv_func_setpgid=yes ac_cv_func_setpgrp=yes ac_cv_func_setregid=yes ac_cv_func_setresgid=yes ac_cv_func_setresuid=yes ac_cv_func_setreuid=yes ac_cv_func_setsid=yes ac_cv_func_setuid=yes ac_cv_func_setvbuf=yes ac_cv_func_sigaction=yes ac_cv_func_siginterrupt=yes ac_cv_func_sigrelse=yes ac_cv_func_snprintf=yes ac_cv_func_statvfs=yes ac_cv_func_strdup=yes ac_cv_func_strftime=yes ac_cv_func_sysconf=yes ac_cv_func_tcgetpgrp=yes ac_cv_func_tcsetpgrp=yes ac_cv_func_tempnam=yes ac_cv_func_tgamma=yes ac_cv_func_timegm=yes ac_cv_func_times=yes ac_cv_func_tmpfile=yes ac_cv_func_tmpnam=yes ac_cv_func_tmpnam_r=yes ac_cv_func_truncate=yes ac_cv_func_uname=yes ac_cv_func_unsetenv=yes ac_cv_func_utimes=yes ac_cv_func_wait3=yes ac_cv_func_wait4=yes ac_cv_func_waitpid=yes ac_cv_func_wcscoll=yes ac_cv_has_makedev=yes ac_cv_have_chflags=no ac_cv_have_decl_isfinite=yes ac_cv_have_decl_isinf=yes ac_cv_have_decl_isnan=yes ac_cv_have_getc_unlocked=yes ac_cv_have_lchflags=no ac_cv_have_long_long_format=yes ac_cv_have_size_t_format=yes ac_cv_header_alloca_h=yes ac_cv_header_asm_types_h=yes ac_cv_header_bluetooth_bluetooth_h=no ac_cv_header_bluetooth_h=no ac_cv_header_conio_h=no ac_cv_header_crypt_h=yes ac_cv_header_curses_h=yes ac_cv_header_direct_h=no ac_cv_header_dirent_dirent_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_errno_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_grp_h=yes ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_io_h=no ac_cv_header_langinfo_h=yes ac_cv_header_libintl_h=yes ac_cv_header_libutil_h=no ac_cv_header_linux_netlink_h=yes ac_cv_header_linux_tipc_h=yes ac_cv_header_memory_h=yes ac_cv_header_minix_config_h=no ac_cv_header_ncurses_h=yes ac_cv_header_netpacket_packet_h=yes ac_cv_header_poll_h=yes ac_cv_header_process_h=no ac_cv_header_pthread_h=yes ac_cv_header_pty_h=yes ac_cv_header_shadow_h=yes ac_cv_header_signal_h=yes ac_cv_header_spawn_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_stropts_h=no ac_cv_header_sys_audioio_h=no ac_cv_header_sys_bsdtty_h=no ac_cv_header_sys_epoll_h=yes ac_cv_header_sys_event_h=no ac_cv_header_sys_file_h=yes ac_cv_header_sys_loadavg_h=no ac_cv_header_sys_lock_h=no ac_cv_header_sys_mkdev_h=no ac_cv_header_sys_modem_h=no ac_cv_header_sys_param_h=yes ac_cv_header_sys_poll_h=yes ac_cv_header_sys_random_h=no ac_cv_header_sys_resource_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_statvfs_h=yes ac_cv_header_sys_sysmacros_h=yes ac_cv_header_sys_termio_h=no ac_cv_header_sys_time_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_types_h_makedev=yes ac_cv_header_sys_un_h=yes ac_cv_header_sys_utsname_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_sysexits_h=yes ac_cv_header_term_h=yes ac_cv_header_termios_h=yes ac_cv_header_thread_h=no ac_cv_header_time=yes ac_cv_header_time_altzone=no ac_cv_header_unistd_h=yes ac_cv_header_util_h=yes ac_cv_header_utime_h=yes ac_cv_header_wchar_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_kpthread=no ac_cv_kthread=no ac_cv_lib_c_inet_aton=yes ac_cv_lib_dl_dlopen=yes ac_cv_lib_dld_shl_load=no ac_cv_lib_intl_textdomain=no ac_cv_lib_nsl_t_open=no ac_cv_lib_readline_rl_callback_handler_install=no ac_cv_lib_readline_rl_completion_display_matches_hook=no ac_cv_lib_readline_rl_completion_matches=no ac_cv_lib_readline_rl_pre_input_hook=no ac_cv_lib_readline_rl_resize_terminal=no ac_cv_lib_socket_socket=no ac_cv_lib_util_openpty=yes ac_cv_lib_z_inflateCopy=yes ac_cv_little_endian_double=yes ac_cv_member_struct_stat_st_birthtime=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_member_struct_stat_st_blocks=yes ac_cv_member_struct_stat_st_flags=no ac_cv_member_struct_stat_st_gen=no ac_cv_member_struct_stat_st_rdev=yes ac_cv_member_struct_tm_tm_zone=yes ac_cv_mixed_endian_double=no ac_cv_mvwdelch_is_expression=yes ac_cv_no_strict_aliasing_ok=yes ac_cv_objext=o ac_cv_olimit_ok=no ac_cv_opt_olimit_ok=no ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_ac_pt_LLVM_PROFDATA=''\'''\''' ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_posix_semaphores_enabled=yes ac_cv_prog_CPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E' ac_cv_prog_PYTHON_FOR_REGEN=python2.7 ac_cv_prog_TRUE=true ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_pthread=no ac_cv_pthread_is_default=yes ac_cv_pthread_system_supported=yes ac_cv_rshift_extends_sign=yes ac_cv_safe_to_define___extensions__=yes ac_cv_search_opendir='none required' ac_cv_search_sem_init='none required' ac_cv_sizeof__Bool=1 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_fpos_t=16 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_off_t=8 ac_cv_sizeof_pid_t=4 ac_cv_sizeof_pthread_t=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sizeof_time_t=8 ac_cv_sizeof_uintptr_t=8 ac_cv_sizeof_void_p=8 ac_cv_sizeof_wchar_t=4 ac_cv_stat_tv_nsec2=no ac_cv_stat_tv_nsec=yes ac_cv_struct_addrinfo=yes ac_cv_struct_sockaddr_storage=yes ac_cv_struct_tm=time.h ac_cv_tanh_preserves_zero_sign=yes ac_cv_target=x86_64-pc-linux-gnu ac_cv_type_int32_t=yes ac_cv_type_int64_t=yes ac_cv_type_mode_t=yes ac_cv_type_off_t=yes ac_cv_type_pid_t=yes ac_cv_type_size_t=yes ac_cv_type_socklen_t=yes ac_cv_type_ssize_t=yes ac_cv_type_uid_t=yes ac_cv_type_uint32_t=yes ac_cv_type_uint64_t=yes ac_cv_type_uintptr_t=yes ac_cv_wchar_t_signed=yes ac_cv_window_has_flags=yes ac_cv_working_tzset=yes ac_cv_x87_double_rounding=yes py_cv_lib_readline=no ## ----------------- ## ## Output variables. ## ## ----------------- ## AR='ar' ARCH_RUN_32BIT='' ARFLAGS='rc' BASECFLAGS=' -fno-strict-aliasing -fp-model strict' BLDLIBRARY='-L. -lpython$(VERSION)' BLDSHARED='$(CC) -shared' BUILDEXEEXT='' CC='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc' CCSHARED='-fPIC' CFLAGS='-g -O2' CFLAGSFORSHARED='$(CCSHARED)' CONFIGURE_MACOSX_DEPLOYMENT_TARGET='' CONFIG_ARGS=' '\''--prefix=/Users/gcheng6/pylith'\'' '\''--enable-shared'\'' '\''CPPFLAGS=-I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include'\'' '\''LDFLAGS=-L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib'\'' '\''CFLAGS=-g -O2'\'' '\''CXXFLAGS=-g -O2 -DMPICH_IGNORE_CXX_SEEK'\'' '\''FCFLAGS='\'' '\''CC=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc'\'' '\''CXX=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx'\'' '\''PKG_CONFIG_PATH=/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libtirpc-1.2.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/zlib-1.2.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libpciaccess-0.16/lib/pkgconfig'\''' CPP='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc -E' CPPFLAGS='-I/Users/gcheng6/pylith/include -I/Users/gcheng6/pylith/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/include -I/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/include' CXX='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicxx' DEFS='-DHAVE_CONFIG_H' DEF_MAKE_ALL_RULE='build_all' DEF_MAKE_RULE='all' DLINCLDIR='.' DLLLIBRARY='' DYNLOADFILE='dynload_shlib.o' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENSUREPIP='no' EXEEXT='' EXPORT_MACOSX_DEPLOYMENT_TARGET='#' EXTRAMACHDEPPATH='' EXTRAPLATDIR='' FRAMEWORKALTINSTALLFIRST='' FRAMEWORKALTINSTALLLAST='' FRAMEWORKINSTALLAPPSPREFIX='' FRAMEWORKINSTALLFIRST='' FRAMEWORKINSTALLLAST='' FRAMEWORKUNIXTOOLSPREFIX='/Users/gcheng6/pylith' GITBRANCH='' GITTAG='' GITVERSION='' GNULD='yes' GREP='/usr/bin/grep' HAS_GIT='no-repository' HAVE_GETHOSTBYNAME='' HAVE_GETHOSTBYNAME_R='' HAVE_GETHOSTBYNAME_R_3_ARG='' HAVE_GETHOSTBYNAME_R_5_ARG='' HAVE_GETHOSTBYNAME_R_6_ARG='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTSONAME='libpython$(VERSION).so.1.0' LDCXXSHARED='$(CXX) -shared' LDFLAGS='-L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/Users/gcheng6/pylith/lib -L/Users/gcheng6/pylith/lib64 -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib -L/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib' LDLAST='' LDLIBRARY='libpython$(VERSION).so' LDLIBRARYDIR='' LDSHARED='$(CC) -shared' LIBC='' LIBFFI_INCLUDEDIR='' LIBM='-lm' LIBOBJS='' LIBRARY='libpython$(VERSION).a' LIBS='-ldl -lutil' LIBTOOL_CRUFT='' LINKCC='$(PURIFY) $(MAINCC)' LINKFORSHARED='-Xlinker -export-dynamic' LIPO_32BIT_FLAGS='' LLVM_PROFDATA=''\'''\''' LLVM_PROF_ERR='no' LLVM_PROF_FILE='' LLVM_PROF_FOUND='not-found' LLVM_PROF_MERGER='true' LN='ln' LTLIBOBJS='' LTOFLAGS='' MACHDEP='linux2' MACHDEP_OBJS='' MAINCC='$(CC)' MKDIR_P='/usr/bin/mkdir -p' MULTIARCH='' OBJEXT='o' OPT='-DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes' OTHER_LIBTOOL_OPT='' PACKAGE_BUGREPORT='https://bugs.python.org/' PACKAGE_NAME='python' PACKAGE_STRING='python 2.7' PACKAGE_TARNAME='python' PACKAGE_URL='' PACKAGE_VERSION='2.7' PATH_SEPARATOR=':' PGO_PROF_GEN_FLAG='-fprofile-generate' PGO_PROF_USE_FLAG='-fprofile-use -fprofile-correction' PKG_CONFIG='/usr/bin/pkg-config' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libtirpc-1.2.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/zlib-1.2.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/lib64/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/lib/pkgconfig:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libpciaccess-0.16/lib/pkgconfig' PLATDIR='plat-linux2' PYTHONFRAMEWORK='' PYTHONFRAMEWORKDIR='no-framework' PYTHONFRAMEWORKIDENTIFIER='org.python.python' PYTHONFRAMEWORKINSTALLDIR='' PYTHONFRAMEWORKPREFIX='' PYTHON_FOR_BUILD='./$(BUILDPYTHON) -E' PYTHON_FOR_REGEN='python2.7' RANLIB='ranlib' RUNSHARED='LD_LIBRARY_PATH=/Users/gcheng6/build/pylith/python-build:/Users/gcheng6/pylith/lib:/Users/gcheng6/pylith/lib64:/Users/gcheng6/pylith/lib:/Users/gcheng6/pylith/lib64:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-cxx-4.2/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/netcdf-c-4.7.4/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/parallel-netcdf-1.12.1/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf-4.2.15/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libtirpc-1.2.6/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/krb5-1.18.2/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openssl-1.1.1g/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libjpeg-turbo-2.0.4/lib64:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hdf5-1.10.6/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/zlib-1.2.11/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/numactl-2.0.12/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libfabric-1.11.0/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/ucx-1.8.1/lib:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/lib64:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/rdma-core-20/lib:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/psm-3.3/lib64:/usr/share/apps/2020.2/base_arch/gcc-4.8.5/opa-psm2-11.2.77/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/hwloc-1.11.11/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libxml2-2.9.10/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/xz-5.2.5/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libiconv-1.16/lib:/usr/share/apps/2020.2/base_arch/gcc-5.4.0/libpciaccess-0.16/lib:/Users/gcheng6/pylith/lib:/Users/gcheng6/pylith/lib64' SGI_ABI='' SHELL='/bin/sh' SHLIBS='$(LIBS)' SIGNAL_OBJS='' SO='.so' SOVERSION='1.0' SRCDIRS='Parser Objects Python Modules' TCLTK_INCLUDES='' TCLTK_LIBS='' THREADHEADERS=' $(srcdir)/Python/thread_atheos.h $(srcdir)/Python/thread_beos.h $(srcdir)/Python/thread_cthread.h $(srcdir)/Python/thread_foobar.h $(srcdir)/Python/thread_lwp.h $(srcdir)/Python/thread_nt.h $(srcdir)/Python/thread_os2.h $(srcdir)/Python/thread_pth.h $(srcdir)/Python/thread_pthread.h $(srcdir)/Python/thread_sgi.h $(srcdir)/Python/thread_solaris.h $(srcdir)/Python/thread_wince.h' THREADOBJ='Python/thread.o' TRUE='true' UNICODE_OBJS='Objects/unicodeobject.o Objects/unicodectype.o' UNIVERSALSDK='' UNIVERSAL_ARCH_FLAGS='' USE_SIGNAL_MODULE='' USE_THREAD_MODULE='' VERSION='2.7' _PYTHON_HOST_PLATFORM='' ac_ct_AR='ar' ac_ct_CC='/usr/share/apps/2020.2/base_arch/gcc-5.4.0/openmpi-3.1.6/bin/mpicc' ac_ct_CXX='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/gcheng6/pylith' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-pc-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='pc' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define _GNU_SOURCE 1 #define _NETBSD_SOURCE 1 #define __BSD_VISIBLE 1 #define _BSD_TYPES 1 #define _DARWIN_C_SOURCE 1 #define _XOPEN_SOURCE 600 #define _XOPEN_SOURCE_EXTENDED 1 #define _POSIX_C_SOURCE 200112L #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define __EXTENSIONS__ 1 #define _ALL_SOURCE 1 #define _GNU_SOURCE 1 #define _POSIX_PTHREAD_SEMANTICS 1 #define _TANDEM_SOURCE 1 #define Py_ENABLE_SHARED 1 #define STDC_HEADERS 1 #define HAVE_ASM_TYPES_H 1 #define HAVE_CRYPT_H 1 #define HAVE_DLFCN_H 1 #define HAVE_ERRNO_H 1 #define HAVE_FCNTL_H 1 #define HAVE_GRP_H 1 #define HAVE_LANGINFO_H 1 #define HAVE_LIBINTL_H 1 #define HAVE_POLL_H 1 #define HAVE_PTHREAD_H 1 #define HAVE_SHADOW_H 1 #define HAVE_SIGNAL_H 1 #define HAVE_STDINT_H 1 #define HAVE_TERMIOS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UTIME_H 1 #define HAVE_SYS_EPOLL_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_POLL_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_STATVFS_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_UN_H 1 #define HAVE_SYS_UTSNAME_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_PTY_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_NETPACKET_PACKET_H 1 #define HAVE_SYSEXITS_H 1 #define HAVE_LINUX_TIPC_H 1 #define HAVE_SPAWN_H 1 #define HAVE_UTIL_H 1 #define HAVE_ALLOCA_H 1 #define HAVE_SYS_SYSMACROS_H 1 #define HAVE_DIRENT_H 1 #define HAVE_LINUX_NETLINK_H 1 #define HAVE_MAKEDEV 1 #define _LARGEFILE_SOURCE 1 #define _FILE_OFFSET_BITS 64 #if defined(SCO_DS) #undef _OFF_T #endif #define RETSIGTYPE void #define HAVE_UINT32_T 1 #define HAVE_UINT64_T 1 #define HAVE_INT32_T 1 #define HAVE_INT64_T 1 #define HAVE_SSIZE_T 1 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_VOID_P 8 #define SIZEOF_SHORT 2 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_FPOS_T 16 #define SIZEOF_SIZE_T 8 #define SIZEOF_PID_T 4 #define HAVE_LONG_LONG 1 #define SIZEOF_LONG_LONG 8 #define HAVE_LONG_DOUBLE 1 #define SIZEOF_LONG_DOUBLE 16 #define HAVE_C99_BOOL 1 #define SIZEOF__BOOL 1 #define HAVE_UINTPTR_T 1 #define SIZEOF_UINTPTR_T 8 #define SIZEOF_OFF_T 8 #define SIZEOF_TIME_T 8 #define SIZEOF_PTHREAD_T 8 #define SHLIB_EXT ".so" #define HAVE_LIBDL 1 #define WITH_THREAD 1 #define _REENTRANT 1 #define PTHREAD_SYSTEM_SCHED_SUPPORTED 1 #define HAVE_PTHREAD_SIGMASK 1 #define HAVE_PTHREAD_ATFORK 1 #define ENABLE_IPV6 1 #define WITH_DOC_STRINGS 1 #define WITH_PYMALLOC 1 #define HAVE_DLOPEN 1 #define HAVE_DYNAMIC_LOADING 1 #define HAVE_ALARM 1 #define HAVE_SETITIMER 1 #define HAVE_GETITIMER 1 #define HAVE_BIND_TEXTDOMAIN_CODESET 1 #define HAVE_CHOWN 1 #define HAVE_CLOCK 1 #define HAVE_CONFSTR 1 #define HAVE_CTERMID 1 #define HAVE_EXECV 1 #define HAVE_FCHMOD 1 #define HAVE_FCHOWN 1 #define HAVE_FORK 1 #define HAVE_FPATHCONF 1 #define HAVE_FTIME 1 #define HAVE_FTRUNCATE 1 #define HAVE_GAI_STRERROR 1 #define HAVE_GETGROUPS 1 #define HAVE_GETLOGIN 1 #define HAVE_GETLOADAVG 1 #define HAVE_GETPEERNAME 1 #define HAVE_GETPGID 1 #define HAVE_GETPID 1 #define HAVE_GETPRIORITY 1 #define HAVE_GETRESUID 1 #define HAVE_GETRESGID 1 #define HAVE_GETPWENT 1 #define HAVE_GETSPNAM 1 #define HAVE_GETSPENT 1 #define HAVE_GETSID 1 #define HAVE_GETWD 1 #define HAVE_INITGROUPS 1 #define HAVE_KILL 1 #define HAVE_KILLPG 1 #define HAVE_LCHOWN 1 #define HAVE_LSTAT 1 #define HAVE_MKFIFO 1 #define HAVE_MKNOD 1 #define HAVE_MKTIME 1 #define HAVE_MMAP 1 #define HAVE_MREMAP 1 #define HAVE_NICE 1 #define HAVE_PATHCONF 1 #define HAVE_PAUSE 1 #define HAVE_POLL 1 #define HAVE_PUTENV 1 #define HAVE_READLINK 1 #define HAVE_REALPATH 1 #define HAVE_SELECT 1 #define HAVE_SEM_OPEN 1 #define HAVE_SEM_TIMEDWAIT 1 #define HAVE_SEM_GETVALUE 1 #define HAVE_SEM_UNLINK 1 #define HAVE_SETEGID 1 #define HAVE_SETEUID 1 #define HAVE_SETGID 1 #define HAVE_SETLOCALE 1 #define HAVE_SETREGID 1 #define HAVE_SETREUID 1 #define HAVE_SETSID 1 #define HAVE_SETPGID 1 #define HAVE_SETPGRP 1 #define HAVE_SETUID 1 #define HAVE_SETVBUF 1 #define HAVE_SNPRINTF 1 #define HAVE_SETLOCALE 1 #define HAVE_SETREGID 1 #define HAVE_SETREUID 1 #define HAVE_SETRESUID 1 #define HAVE_SETRESGID 1 #define HAVE_SETSID 1 #define HAVE_SETPGID 1 #define HAVE_SETPGRP 1 #define HAVE_SETUID 1 #define HAVE_SETVBUF 1 #define HAVE_SNPRINTF 1 #define HAVE_SIGACTION 1 #define HAVE_SIGINTERRUPT 1 #define HAVE_SIGRELSE 1 #define HAVE_STRFTIME 1 #define HAVE_SYSCONF 1 #define HAVE_TCGETPGRP 1 #define HAVE_TCSETPGRP 1 #define HAVE_TEMPNAM 1 #define HAVE_TIMEGM 1 #define HAVE_TIMES 1 #define HAVE_TMPFILE 1 #define HAVE_TMPNAM 1 #define HAVE_TMPNAM_R 1 #define HAVE_TRUNCATE 1 #define HAVE_UNAME 1 #define HAVE_UNSETENV 1 #define HAVE_UTIMES 1 #define HAVE_WAITPID 1 #define HAVE_WAIT3 1 #define HAVE_WAIT4 1 #define HAVE_WCSCOLL 1 #define HAVE_CHROOT 1 #define HAVE_LINK 1 #define HAVE_SYMLINK 1 #define HAVE_FCHDIR 1 #define HAVE_FSYNC 1 #define HAVE_FDATASYNC 1 #define HAVE_EPOLL 1 #define HAVE_FLOCK 1 #define HAVE_GETPAGESIZE 1 #define HAVE_ZLIB_COPY 1 #define HAVE_HSTRERROR 1 #define HAVE_INET_ATON 1 #define HAVE_INET_PTON 1 #define HAVE_SETGROUPS 1 #define HAVE_OPENPTY 1 #define HAVE_FORKPTY 1 #define HAVE_MEMMOVE 1 #define HAVE_FSEEKO 1 #define HAVE_FSTATVFS 1 #define HAVE_FTELLO 1 #define HAVE_STATVFS 1 #define HAVE_DUP2 1 #define HAVE_GETCWD 1 #define HAVE_STRDUP 1 #define HAVE_GETPGRP 1 #define HAVE_SETPGRP 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_DEVICE_MACROS 1 #define HAVE_GETADDRINFO 1 #define HAVE_GETNAMEINFO 1 #define TIME_WITH_SYS_TIME 1 #define HAVE_STRUCT_TM_TM_ZONE 1 #define HAVE_TM_ZONE 1 #define HAVE_STRUCT_STAT_ST_RDEV 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_STRUCT_STAT_ST_BLOCKS 1 #define SYS_SELECT_WITH_SYS_TIME 1 #define HAVE_ADDRINFO 1 #define HAVE_SOCKADDR_STORAGE 1 #define HAVE_PROTOTYPES 1 #define HAVE_STDARG_PROTOTYPES 1 #define HAVE_SOCKETPAIR 1 #define VA_LIST_IS_ARRAY 1 #define HAVE_GETHOSTBYNAME_R 1 #define HAVE_GETHOSTBYNAME_R 1 #define HAVE_GETHOSTBYNAME_R_6_ARG 1 #define DOUBLE_IS_LITTLE_ENDIAN_IEEE754 1 #define HAVE_GCC_ASM_FOR_X87 1 #define X87_DOUBLE_ROUNDING 1 #define TANH_PRESERVES_ZERO_SIGN 1 #define HAVE_ACOSH 1 #define HAVE_ASINH 1 #define HAVE_ATANH 1 #define HAVE_COPYSIGN 1 #define HAVE_ERF 1 #define HAVE_ERFC 1 #define HAVE_EXPM1 1 #define HAVE_FINITE 1 #define HAVE_GAMMA 1 #define HAVE_HYPOT 1 #define HAVE_LGAMMA 1 #define HAVE_LOG1P 1 #define HAVE_ROUND 1 #define HAVE_TGAMMA 1 #define HAVE_DECL_ISINF 1 #define HAVE_DECL_ISNAN 1 #define HAVE_DECL_ISFINITE 1 #define HAVE_WCHAR_H 1 #define SIZEOF_WCHAR_T 4 #define Py_UNICODE_SIZE 2 #define Py_USING_UNICODE 1 #define PY_UNICODE_TYPE unsigned short #define HAVE_GETC_UNLOCKED 1 #define HAVE_STRUCT_TM_TM_ZONE 1 #define HAVE_TM_ZONE 1 #define HAVE_WORKING_TZSET 1 #define HAVE_STAT_TV_NSEC 1 #define HAVE_CURSES_H 1 #define HAVE_NCURSES_H 1 #define HAVE_TERM_H 1 #define MVWDELCH_IS_EXPRESSION 1 #define WINDOW_HAS_FLAGS 1 #define HAVE_CURSES_IS_PAD 1 #define HAVE_CURSES_IS_TERM_RESIZED 1 #define HAVE_CURSES_RESIZE_TERM 1 #define HAVE_CURSES_RESIZETERM 1 #define HAVE_CURSES_IMMEDOK 1 #define HAVE_CURSES_SYNCOK 1 #define HAVE_CURSES_WCHGAT 1 #define HAVE_CURSES_FILTER 1 #define HAVE_CURSES_HAS_KEY 1 #define HAVE_CURSES_TYPEAHEAD 1 #define HAVE_CURSES_USE_ENV 1 #define HAVE_DEV_PTMX 1 #define PY_FORMAT_LONG_LONG "ll" #define PY_FORMAT_SIZE_T "z" #define HAVE_COMPUTED_GOTOS 1 configure: exit 0